Papers by Paweł Błażej

  1. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020)
    Basic principles of the genetic code extension Royal Society Open Science
    7 () pp. 191384
  2. Małgorzata Wnętrzak, Paweł Błażej, Paweł Mackiewicz (2020)
    Properties of the standard genetic code and its alternatives measured by codon usage from corresponding genomes ''Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) - Volume 3: BIOINFORMATICS pp. 44-51
  3. Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020)
    The Properties of the Standard Genetic Code and Its Selected Alternatives in Terms of the Optimal Graph Partition Communications in Computer and Information Science
    1211 () pp. 170-191
  4. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Przemysław Gagat, Paweł Mackiewicz (2019)
    Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code. Journal of Theoretical Biology
    464 () pp. 21-32
  5. Paweł Błażej, Elena Fimmel, Markus Gumbel (2019)
    The Quality of Genetic Code Models in Terms of Their Robustness Against Point Mutations Bulletin of Mathematical Biology
    81 () pp. 2239-2257
  6. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019)
    The influence of different types of translational inaccuracies on the genetic code structure BMC Bioinformatics
    20 (1) pp. 114
  7. Małgorzata Wnętrzak, Paweł Błażej, Paweł Mackiewicz (2019)
    Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts BioSystems
    181 () pp. 44-50
  8. Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019)
    The impact of the transversion/transition ratio on the optimal genetic code graph partition ''Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - Volume 3: BIOINFORMATICS pp. 55-65
  9. Paweł Błażej, Małgorzata Wnętrzak, Paweł Mackiewicz (2018)
    The Importance of Changes Observed in the Alternative Genetic Codes. ''Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) - Volume 3: BIOINFORMATICS pp. 154-159
  10. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2018)
    Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm. PLoS One
    13 (8)
  11. Małgorzata Wnętrzak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz (2018)
    The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm. BMC Evolutionary Biology
    18 () pp. 192
  12. Małgorzata Proćków, Jarosław Proćkow, Paweł Błażej, Paweł Mackiewicz (2018)
    The influence of habitat preferences on shell morphology in ecophenotypes of Trochulus hispidus complex. Science of the Total Environment
    630 () pp. 1036-1043
  13. Dorota Mackiewicz, Piotr Posacki, Michał Burdukiewicz, Paweł Błażej (2018)
    Role of recombination and faithfulness to partner in sex chromosome degeneration Scientific Reports
    8 (1) pp. 8978
  14. Paweł Błażej, Małgorzata Wnętrzak, Małgorzata Grabińska, Paweł Mackiewicz (2017)
    Representations of Search Spaces in the Problem of Mutational Pressure Optimization According to Protein-Coding Sequences. Journal of Computational Biology
    24 (11) pp. 1089–1098
  15. Paweł Błażej, Dorota Mackiewicz, Małgorzata Wnętrzak, Paweł Mackiewicz (2017)
    The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons. G3 (Bethesda)
    7 (3) pp. 967-981
  16. Paweł Błażej, Dorota Mackiewicz, Małgorzata Grabińska, Małgorzata Wnętrzak, Paweł Mackiewicz (2017)
    Optimization of amino acid replacement costs by mutational pressure in bacterial genomes. Scientific Reports
    7 (1) pp. 1061
  17. Joanna Zareba, Paweł Błażej, Agnieszka Łaszkiewicz, Lukasz Sniezewski, Michał Majkowski, Sylwia Janik, Małgorzata Cebrat (2017)
    Uneven distribution of complementary sex determiner (csd) alleles in Apis mellifera population Scientific Reports
    7 (1) pp. 2317
  18. Paweł Błażej, Małgorzata Wnętrzak, Paweł Mackiewicz (2016)
    The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization Biosystems
    150 () pp. 61-72
  19. Paweł Błażej, Błażej Miasojedow, Małgorzata Grabińska, Paweł Mackiewicz (2015)
    Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes PLoS One
    10 (6)
  20. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2014)
    Studies of Mutation Accumulation in Three Codon Positions using Monte Carlo Simulations and Metropolis-Hastings Algorithm ''Proceedings of the BIOSTEC 2014, 7th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2014, 5th International Conference on Bioinformatics Models, Methods and Algorithms, Angers, Loire Valley, France, 3-6 March, 2014 pp. 245-252
  21. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat, Małgorzata Wańczyk (2013)
    Using Evolutionary Algorithms in Finding of Optimized Nucleotide Substitution Matrices. ''Proceedings of the Genetic and Evolutionary Computation Conference, GECCO'13, July 6–10, 2013, Amsterdam, The Netherlands. Companion ACM 978-1-4503-1964-5/13/07 pp. 41-42
  22. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2013)
    Simulation of Prokaryotic Genome Evolution Subjected to Mutational Pressures Associated with DNA Replication. Communications in Computer and Information Science
    357 () pp. 150–161
  23. Paweł Błażej, Paweł Mackiewicz, Małgorzata Wańczyk, Stanisław Cebrat (2013)
    Evolution of Bacterial Genome under Changing Mutational Pressure Computer Simulation Studies. ''Proceedings of the BIOSTEC 2013, 6th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2013, 4th International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11-14 February, 2013 pp. 272-277
  24. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2013)
    Two algorithms based on Markov chains and their application to recognition of protein coding genes in prokaryotic genomes. Applicationes Mathematicae
    40 (4) pp. 447–457
  25. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    Simulation of bacterial genome evolution under replicational mutational pressures. ''Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 pp. 51-57
  26. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    New approach in coding signal recognition using homogeneous Markov chains independently for three codon positions. International Journal of Bioscience, Biochemistry and Bioinformatics
    3 (2) pp. 183-187
  27. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    How to deal with small Open Reading Frames? ''Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 pp. 246-250
  28. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2012)
    Influence of mutational pressure on protein coding sequences in bacterial genomes. ''Proceedings of the Eighteenth National Conference on Applications of Mathematics in Biology and Medicine. Krynica Morska, 23-27 September 2012 pp. 136-141
  29. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2011)
    Algorithm for finding coding signal using homogeneous Markov chains independently for three codon positions ''Proceedings of the 2011 International Conference on Bioinformatics and Computational Biology (ICBCB 2011), Haikou, China, 22-24 February, 2011 pp. 20-24
  30. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2011)
    Comparison of two algorithms based on Markov chains applied in recognition of protein coding sequences in prokaryotes. Proceedings of the Seventeenth National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Koscielisko, 1-6 September 2011
    17 () pp. 118-123
  31. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2010)
    Using the genetic code wisdom for recognizing protein coding sequences. Proceedings of the 2010 International Conference on Bioinformatics & Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, Vol.
    1 () pp. 302-305

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