Our publications

1. Krzysztof Stefaniak, Oleksandr M. Kovalchuk, Urszula Ratajczak-Skrzatek, Aleksandra Kropczyk, Paweł Mackiewicz, Grzegorz Kłys, Magdalena Krajcarz, Maciej T. Krajcarz, Adam Nadachowski, Grzegorz Lipecki, Karol Karbowski, Bogdan Ridush, Martin Sabol, Tomasz Płonka (2023) Chronology and distribution of Central and Eastern European Pleistocene rhinoceroses (Perissodactyla, Rhinocerotidae) – A review. Quaternary International 674–675 () , pp. 87-108
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2. Konrad Pawlak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz (2023) The influence of the selection at the amino acid level on synonymous codon usage from the viewpoint of alternative genetic codes. International Journal of Molecular Sciences 24 (2) , pp. 1185
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3. Przemysław Gagat, Anna Duda-Madej, Michał Ostrówka, Filip Pietluch, Alicja Seniuk, Paweł Mackiewicz, Michał Burdukiewicz (2023) Testing antimicrobial properties of selected short amyloids. International Journal of Molecular Sciences 24 (1) , pp. 804
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4. Michał Ostrówka, Anna Duda-Madej, Filip Pietluch, Paweł Mackiewicz, Przemysław Gagat (2023) Testing antimicrobial properties of human lactoferrin-derived fragments. International Journal of Molecular Sciences 24 (13) , pp. 10529
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5. Katarzyna Sidorczuk, Przemysław Gagat, Jakub Kała, Henrik Nielsen, Filip Pietluch, Paweł Mackiewicz, Michał Burdukiewicz (2023) Prediction of protein subplastid localization and origin with PlastoGram. Scientific Reports 13 () , pp. 8365
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6. Katarzyna Sidorczuk, Adrianna Aleksandrowicz, Michał Burdukiewicz, Robert A. Kingsley, Rafał Kolenda (2023) Genomic characterization of enterohaemolysin-encoding haemolytic Escherichia coli of animal and human origin. Microbial Genomics 9 (4) , pp. mgen000999
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7. Katarzyna Sidorczuk, Paweł Mackiewicz, Filip Pietluch, Przemysław Gagat (2023) Characterization of signal and transit peptides based on motif composition and taxon-specific patterns. Scientific Reports 13 () , pp. 15751
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8. Michał Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Katarzyna Hubicka, Mateusz Bąkała, Anna Lassota, Jakub Stecko, Natalia Szymańska, Jakub W Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jarosław Chilimoniuk, Izabela Jęśkowiak, Marlena Gąsior-Glogowska, Małgorzata Kotulska (2023) AmyloGraph: a comprehensive database of amyloid–amyloid interactions. Nucleic Acids Research 51 (D1) , pp. D352–D357
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9. Karolina Doan, Magdalena Niedziałkowska, Krzysztof Stefaniak, Maciej Sykut, Bogumiła Jędrzejewska, Urszula Ratajczak-Skrzatek, Natalia Piotrowska, Bogdan Ridush, Frank Zachos, Danijela Popović, Mateusz Baca, Paweł Mackiewicz, Pavel Kosintsev, Daniel Makowiecki, Maxim Charniauski, Gennady. G. Boeskorov, Alexey Anatolievich Bondarev, Gabriel Danila, Josip Kusak, Eve Rannamäe, Urmas Saarma, Marine Arakelyan, Nina Manaseryan, Dariusz Krasnodębski, Vadim V. Titov, Pavel Hulva, Adrian Balasescu, Katerina Trantalidou, Vesna Dimitrijevic, Andrey V. Shpansky, Oleksandr M. Kovalchuk, Alexey M. Klementiev, Irina Foronova, Dmitriy G. Malikov, Anna Juras, Pavel A. Nikolskiy, Semyon Egorovich Grigoriev, Maksim Yurievich Cheprasov, Gavril Petrovich Novgorodov, Alexandr Dmitrievich Sorokin, Jarosław Wilczyński, Albert Vasilievich Protopopov, Grzegorz Lipecki, Anna Stankovic (2022) Phylogenetics and phylogeography of red deer mtDNA lineages during the last 50 000 years in Eurasia Zoological Journal of the Linnean Society (194) , pp. 431-456
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10. Christin Bartlitz, Rafał Kolenda, Jarosław Chilimoniuk, Krzysztof Grzymajło, Stefan Rödiger, Rolf Bauerfeind, Aamir Ali, Veronika Tchesnokova, Dirk Roggenbuck, Peter Schierack (2022) Adhesion of Enteropathogenic, Enterotoxigenic, and Commensal Escherichia coli to the Major Zymogen Granule Membrane Glycoprotein 2 Applied and Environmental Microbiology 88 (5) , pp. e02279-21
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11. Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch, Jakub Kała, Dominik Rafacz, Mateusz Bąkała, Jadwiga Słowik, Rafał Kolenda, Stefan Rödiger, Legana C. H. W. Fingerhut, Ira R. Cooke, Paweł Mackiewicz, Michał Burdukiewicz (2022) Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data Briefings in Bioinformatics 23 (5) , pp. 1-12
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12. Paweł Błażej, Konrad Pawlak, Dorota Mackiewicz, Paweł Mackiewicz (2022) Model of Genetic Code Structure Evolution under Various Types of Codon Reading International Journal of Molecular Sciences 23 () , pp. 1690
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13. Robert Mroczek, Agnieszka Łaszkiewicz, Paweł Błażej, Kinga Adamczyk-Weglarzy, Joanna Niedbalska-Tarnowska, Małgorzata Cebrat (2022) New insights into the criteria of functional heterozygosity of the Apis mellifera complementary sex determining gene– Discovery of a functional allele pair differing by a single amino acid PLoS ONE 17 (8) , pp. e0271922
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14. Paweł Mackiewicz, Maciej Matosiuk, Magdalena Świsłocka, Frank E. Zachos, Ghaiet M. Hajji, Alexander P. Saveljev, Ivan V. Seryodkin, Tarlan Farahvash, Hamid Reza Rezaei, Rasoul Vaez Torshizi, Stefano Mattioli, Mirosław Ratkiewicz (2022) Phylogeny and evolution of the genus Cervus (Cervidae, Mammalia) as revealed by complete mitochondrial genomes Scientific Reports 12 () , pp. 16381
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15. Małgorzata Proćków, Elżbieta Kuźnik-Kowalska, Aleksandra Żeromska, Paweł Mackiewicz (2022) Temporal variation in climatic factors influences phenotypic diversity of Trochulus land snails Scientific Reports 12 () , pp. 12357
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16. Oriol Bárcenas, Carlos Pintado-Grima, Katarzyna Sidorczuk, Felix Teufel, Henrik Nielsen, Salvador Ventura, Michał Burdukiewicz (2022) The dynamic landscape of peptide activity prediction Computational and Structural Biotechnology Journal 20 () , pp. 6526–6533
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17. Dagmara Dyczko, Dorota Kiewra, Aleksandra Kolanek, Paweł Błażej (2022) The influence of local environmental factors in southwestern Poland on the abundance of Ixodes ricinus and prevalence of infection with Borrelia burgdorferi s.l. and B. miyamotoi Parasitology Research 121 () , pp. 1575-1585
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18. Paweł Błażej, Dariusz R. Kowalski, Dorota Mackiewicz, Małgorzata Wnętrzak, Daniyah A. Aloqalaa, Paweł Mackiewicz (2022) The structure of the genetic code as an optimal graph clustering problem Journal of Mathematical Biology 85 (1) , pp. 9
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19. Andrzej Wiśniewski, Maciej Sobczyński, Konrad Pawełczyk, Irena Porębska, Monika Jasek, Marta Wagner, Wanda Niepiekło-Miniewska, Aneta Kowal, Joanna Dubis, Natalia Jędruchniewicz, Piotr Kuśnierczyk (2021) Polymorphisms of Antigen-Presenting Machinery Genes in Non-Small Cell Lung Cancer: Different Impact on Disease Risk and Clinical Parameters in Smokers and Never-Smokers Frontiers in immunology 12 () , pp. 664474
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20. Adrianna Aleksandrowicz, Muhammad Moman Khan, Katarzyna Sidorczuk, Mateusz Noszka, Rafał Kolenda (2021) Whatever makes them stick–Adhesins of avian pathogenic Escherichia coli Veterinary Microbiology 257 () , pp. 109095
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21. Rafał Kolenda, Katarzyna Sidorczuk, Mateusz Noszka, Adrianna Aleksandrowicz, Muhammad Moman Khan, Michał Burdukiewicz, Derek Pickard, Peter Schierack (2021) Genome placement of alpha-haemolysin cluster is associated with alpha-haemolysin sequence variation, adhesin and iron acquisition factor profile of Escherichia coli Microbial Genomics 7 (21) , pp. 000743
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22. Jarosław Chilimoniuk, Alicja Gosiewska, Jadwiga Słowik, Romano Weiss, P. Markus Deckert, Stefan Rödiger, Michał Burdukiewicz (2021) countfitteR: efficient selection of count distributions to assess DNA damage Annals of Translational Medicine 9 (7) , pp. 528
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23. Kuba Nowak, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2021) The Extension of the Standard Genetic Code via Optimal Codon Blocks Division Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2021) - Volume 3: BIOINFORMATICS , pp. 30-37
    
    
24. Daria Augustyniak, Eliza Kramarska, Paweł Mackiewicz, Magdalena Orczyk-Pawiłowicz, Fionnuala T Lundy (2021) Mammalian Neuropeptides as Modulators of Microbial Infections: Their Dual Role in Defense versus Virulence and Pathogenesis International Journal of Molecular Sciences 22 (7) , pp. 3658
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25. Urszula Ratajczak, Krzysztof Stefaniak, Aleksandra Żeromska, Przemysław Gagat, Paweł Mackiewicz (2021) Temporal and spatial differentiation of Pleistocene and recent Saiga deduced from morphometric analyses of cranial remains Hystrix 32 (1) , pp. 18–26
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26. Krzysztof Stefaniak, Grzegorz Lipecki, Adam Nadachowski, Agata Semba, Urszula Ratajczak, Adam Kotowski, Martina Roblíčková, Piotr Wojtal, Andrey V. Shpansky, Dmitriy G. Malikov, Tatiana V. Krakhmalnaya, Oleksandr M. Kovalchuk, Gennady. G. Boeskorov, Pavel A. Nikolskiy, Gennady F. Baryshnikov, Bogdan Ridush, Gwidon Jakubowski, Kamilla Pawłowska, Krzysztof Cyrek, Magdalena Sudoł-Procyk, Łukasz Czyżewski, Magdalena Krajcarz, Maciej T. Krajcarz, Aleksandra Żeromska, Przemysław Gagat, Paweł Mackiewicz (2021) Diversity of muskox Ovibos moschatus (Zimmerman, 1780) (Bovidae, Mammalia) in time and space based on cranial morphometry Historical Biology 33 (1) , pp. 62-77
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27. Natalia Malek, Aleksandra Michrowska, Ewa Mazurkiewicz, Ewa Mrówczyńska, Paweł Mackiewicz, Antonina J Mazur (2021) The origin of the expressed retrotransposed gene ACTBL2 and its influence on human melanoma cells’ motility and focal adhesion formation Scientific Reports 11 () , pp. 3329
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28. Natalia Szulc, Michał Burdukiewicz, Marlena Gąsior-Glogowska, Jakub W Wojciechowski, Jarosław Chilimoniuk, Paweł Mackiewicz, Tomas Šneideris, Vytautas Smirnovas, Małgorzata Kotulska (2021) Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data Scientific Reports 11 () , pp. 8934
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29. Kuba Nowak, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2021) Some theoretical aspects of reprogramming the standard genetic code Genetics 218 (1) , pp. iyab040
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30. Małgorzata Kot, Maciej T. Krajcarz, Magdalena Krajcarz, Magdalena Moskal-del Hoyo, Natalia Gryczewska, Michał Wojenka, Katarzyna Pyżewicz, Virginie Sinet-Mathiot, Marcin Diakowski, Stanisław Fedorowicz, Michał Gąsiorowski, Adrian Marciszak, Grzegorz Lipecki, Paweł Mackiewicz (2021) Chronostratigraphy of Jerzmanowician. New data from Koziarnia Cave, Poland Journal of Archaeological Science: Reports 38 () , pp. 103014
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31. Adam Dawid Urantówka, Aleksandra Kroczak, Tomasz Strzała, Grzegorz Zaniewicz, Marcin Kurkowski, Paweł Mackiewicz (2021) Mitogenomes of Accipitriformes and Cathartiformes were subjected to ancestral and recent duplications followed by gradual degeneration Genome Biology and Evolution 13 (9) , pp. evab193
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32. Konrad Pawlak, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz, Paweł Błażej (2021) Models of genetic code structure evolution with variable number of coded labels Biosystems 210 () , pp. 104528
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33. Magdalena Niedziałkowska, Karolina Doan, Marcin Górny, Maciej Sykut, Krzysztof Stefaniak, Natalia Piotrowska, Bogumiła Jędrzejewska, Bogdan Ridush, Sławomira Pawełczyk, Paweł Mackiewicz, Ulrich Schmölcke, Pavel Kosintsev, Daniel Makowiecki, Maxim Charniauski, Dariusz Krasnodębski, Eve Rannamäe, Urmas Saarma, Marine Arakelyan, Nina Manaseryan, Vadim V. Titov, Pavel Hulva, Adrian Balasescu, Ralph Fyfe, Jessie Woodbridge, Katerina Trantalidou, Vesna Dimitrijevic, Oleksandr M. Kovalchuk, Jarosław Wilczyński, Theodor Obada, Grzegorz Lipecki, Alesia Arabey, Anna Stankovic (2021) Winter temperature and forest cover have shaped red deer distribution in Europe and the Ural Mountains since the Late Pleistocene Journal of Biogeography 48 () , pp. 147–159
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34. Małgorzata Proćków, Elżbieta Kuźnik-Kowalska, Joanna Pieńkowska, Aleksandra Żeromska, Paweł Mackiewicz (2021) Speciation in sympatric species of land snails from the genus Trochulus (Gastropoda, Hygromiidae) Zoologica Scripta 50 (1) , pp. 16-42
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35. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2020) New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves. BMC Genomics 21 () , pp. 874
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36. Przemysław Gagat, Katarzyna Sidorczuk, Filip Pietluch, Paweł Mackiewicz (2020) The Photosynthetic Adventure of Paulinella spp. in M. Kloc (ed.), Symbiosis: Cellular, Molecular, Medical and Evolutionary Aspects, Results and Problems in Cell Differentiation, Springer Nature Switzerland AG, ISBN 978-3-030-51848-6 69 () , pp. 353-386
    
    
37. Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020) The Properties of the Standard Genetic Code and Its Selected Alternatives in Terms of the Optimal Graph Partition Communications in Computer and Information Science 1211 () , pp. 170-191
    
    
38. Małgorzata Wnętrzak, Paweł Błażej, Paweł Mackiewicz (2020) Properties of the standard genetic code and its alternatives measured by codon usage from corresponding genomes Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) - Volume 3: BIOINFORMATICS , pp. 44-51
    
    
39. Paweł Mackiewicz (2020) Wspomnienie o profesorze Stanisławie Cebracie Przegląd Uniwersytecki 3 (233) , pp. 72-75
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40. Paweł Mackiewicz (2020) AUG as the Translation Start Codon in Circular RNA Molecules: A Connection between Protein-Coding Genes and Transfer RNAs? Bioessays 42 (6) , pp. e2000061
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41. Magdalena Świsłocka, Maciej Matosiuk, Mirosław Ratkiewicz, Anetta Borkowska, Magdalena Czajkowska, Paweł Mackiewicz (2020) Phylogeny and diversity of moose (Alces alces, Cervidae, Mammalia) revealed by complete mitochondrial genomes Hystrix, the Italian Journal of Mammalogy 31 (1) , pp. 1-9
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42. Marcin Bielecki, Svetlana Antonyuk, Richard W. Strange, Klaudia Siemińska, John W. Smalley, Paweł Mackiewicz, Michał Śmiga, Megan Cowan, Michael J. Capper, Paulina Ślęzak, Mariusz Olczak, Teresa Olczak (2020) Prevotella intermedia produces two proteins homologous to Porphyromonas gingivalis HmuY but with different heme coordination mode Biochemical Journal 477 (2) , pp. 381-405
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43. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020) Basic principles of the genetic code extension Royal Society Open Science 7 () , pp. 191384
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44. Anna Lemanik, Mateusz Baca, Krzysztof Wertz, Paweł Socha, Danijela Popović, Teresa Tomek, Grzegorz Lipecki, Anna Kraszewska, Barbara Miękina, Aleksandra Żeromska, Andrea Pereswiet-Soltan, Zbigniew Szyndlar, Magdalena Cieśla, Paweł Valde-Nowak, Paweł Mackiewicz, Adam Nadachowski (2020) The impact of major warming at 14.7 ka on environmental changes and activity of Final Palaeolithic hunters at a local scale (Orawa-Nowy Targ Basin, Western Carpathians, Poland Archaeological and Anthropological Sciences 12 () , pp. 66
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45. Chunlian Li, Matt P. Ashworth, Paweł Mackiewicz, Przemysław Dąbek, Jakub Witkowski, Ewa Górecka, Marta Krzywda, Andrzej Witkowski (2020) Morphology, phylogeny, and molecular dating in Plagiogrammaceae family focused on Plagiogramma-Dimeregramma complex (Urneidophycidae, Bacillariophyceae) Molecular Phylogenetics and Evolution 148 () , pp. 106808
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46. Krzysztof Stefaniak, Urszula Ratajczak, Adam Kotowski, Magdalena Kozłowska, Paweł Mackiewicz (2020) Polish Pliocene and Quaternary deer and their biochronological implications Quaternary International 546 () , pp. 64-83
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47. Monika Jasek, Agnieszka Bojarska-Junak, Maciej Sobczyński, Waldemar Wagner, Sylwia Chocholska, Jacek Roliński, Dariusz Wołowiec, Lidia Karabon (2020) Association of Common Variants of TNFSF13 and TNFRSF13B Genes with CLL Risk and Clinical Picture, as Well as Expression of Their Products-APRIL and TACI Molecules Cancers (Basel) 12 (10) , pp. 2873
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48. Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Jarosław Chilimoniuk, Stefan Rödiger, Przemysław Gagat (2020) Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram. International Journal of Molecular Sciences 21 (12) , pp. 4310
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49. Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Mateusz Bąkała, Jadwiga Słowik, Przemysław Gagat (2020) CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides Pharmaceutics 12 (11) , pp. 1045
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50. Marta Sochocka, Michał Ochnik, Maciej Sobczyński, Iwona Siemieniec, Beata Orzechowska, Piotr Naporowski, Jerzy Leszek (2019) New therapeutic targeting of Alzheimer’s disease with the potential use of prolinerich polypeptide complex to modulate an innate immune response - preliminary study Journal of Neuroinflammation 16 () , pp. 137
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51. Marta Sochocka, Maciej Sobczyński, Michał Ochnik, Katarzyna Zwolińska, Jerzy Leszek (2019) Hampering Herpesviruses HHV-1 and HHV-2 Infection by Extract of Ginkgo biloba (EGb) and Its Phytochemical Constituents Frontiers in Microbiology 10 () , pp. 2367
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52. Paweł Błażej, Elena Fimmel, Markus Gumbel (2019) The Quality of Genetic Code Models in Terms of Their Robustness Against Point Mutations Bulletin of Mathematical Biology 81 () , pp. 2239-2257
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53. Malgorzata Kwasniak-Owczarek, Urszula Kazmierczak, Artur Tomal, Paweł Mackiewicz, Hanna Jańska (2019) Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria Nucleic Acids Research 47 (22) , pp. 11790-11806
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54. Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019) The impact of the transversion/transition ratio on the optimal genetic code graph partition Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - Volume 3: BIOINFORMATICS , pp. 55-65
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55. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019) The influence of different types of translational inaccuracies on the genetic code structure BMC Bioinformatics 20 (1) , pp. 114
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56. Małgorzata Proćków, Michael Duda, Luise Kruckenhauser, Wim J. M. Maassen, Anton J. de Winter, Paweł Mackiewicz (2019) Redescription of the western Balkan species Xerocampylaea waldemari and its phylogenetic relationships to other Urticicolini (Gastropoda: Hygromiidae) Systematics and Biodiversity 17 (4) , pp. 367-384
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57. Małgorzata Wnętrzak, Paweł Błażej, Paweł Mackiewicz (2019) Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts BioSystems 181 () , pp. 44-50
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58. Paweł Mackiewicz, Adam Dawid Urantówka, Aleksandra Kroczak, Dorota Mackiewicz (2019) Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications. Genome Biology and Evolution 11 (10) , pp. 2824-2849
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59. Adrian Marciszak, Charles Schouwenburg, Wiktoria Gornig, Grzegorz Lipecki, Paweł Mackiewicz (2019) Morphometric comparison of Panthera spelaea (Goldfuss, 1810) from Poland with the lion remains from Eurasia over the last 700 ka. Quaternary Science Reviews 223 () , pp. 105950
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60. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Przemysław Gagat, Paweł Mackiewicz (2019) Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code. Journal of Theoretical Biology 464 () , pp. 21-32
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61. Katarzyna Sidorczuk, Paweł Mackiewicz, Przemysław Gagat (2018) Paulinella chromatophora – niezwykła fotosyntetyczna przygoda ameby i sinicy Kosmos 67 (3) , pp. 661-673
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62. Małgorzata Wnętrzak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz (2018) The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm. BMC Evolutionary Biology 18 () , pp. 192
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63. Adam Dawid Urantówka, Aleksandra Kroczak, Tony Silva, Rafael Zamora Padrón, Nuhacet Fernández Gallardo, Julie Blanch, Barry Blanch, Paweł Mackiewicz (2018) New insight into parrots' mitogenomes indicates that their ancestor contained a duplicated region. Molecular Biology and Evolution 35 (12) , pp. 2989-3009
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64. Małgorzata Proćków, Jarosław Proćkow, Paweł Błażej, Paweł Mackiewicz (2018) The influence of habitat preferences on shell morphology in ecophenotypes of Trochulus hispidus complex. Science of the Total Environment 630 () , pp. 1036-1043
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65. Karolina Doan, Paweł Mackiewicz, Edson Sandoval-Castellanos, Krzysztof Stefaniak, Bogdan Ridush, Love Dalen, Piotr Węgleński, Anna Stankovic (2018) The history of Crimean red deer population and Cervus phylogeography in Eurasia. Zoological Journal of the Linnean Society 183 (1) , pp. 208-225
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66. Michał Burdukiewicz, Piotr Sobczyk, Jarosław Chilimoniuk, Przemysław Gagat, Paweł Mackiewicz (2018) Prediction of Signal Peptides in Proteins from Malaria Parasites. International Journal of Molecular Sciences 19 (12) , pp. E3709
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67. Michał Burdukiewicz, Przemysław Gagat, Sławomir Jabłoński, Jarosław Chilimoniuk, Michał Gaworski, Paweł Mackiewicz, Marcin Łukaszewicz (2018) PhyMet(2): a database and toolkit for phylogenetic and metabolic analyses of methanogens. Environmental Microbiology Reports 10 (3) , pp. 378-382
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68. Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2018) Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm. PLoS One 13 (8) , pp. e0201715
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69. Marcin Bielecki, Svetlana Antonyuk, Richard W. Strange, John W. Smalley, Paweł Mackiewicz, Michał Śmiga, Paulina Stępień, Mariusz Olczak, Teresa Olczak (2018) Tannerella forsythia Tfo belongs to Porphyromonas gingivalis HmuY-like family of proteins but differs in heme-binding properties. Bioscience Reports 38 (5) , pp. BSR20181325
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70. Daria Augustyniak, Rafał Seredyński, Siobhán McClean, Justyna Roszkowiak, Bartosz Roszniowski, Darren L. Smith, Zuzanna Drulis-Kawa, Paweł Mackiewicz (2018) Virulence factors of Moraxella catarrhalis outer membrane vesicles are major targets for cross-reactive antibodies and have adapted during evolution. Scientific Reports 8 () , pp. 4955
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71. Dorota Mackiewicz, Piotr Posacki, Michał Burdukiewicz, Paweł Błażej (2018) Role of recombination and faithfulness to partner in sex chromosome degeneration Scientific Reports 8 (1) , pp. 8978
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72. Paweł Błażej, Małgorzata Wnętrzak, Paweł Mackiewicz (2018) The Importance of Changes Observed in the Alternative Genetic Codes. Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) - Volume 3: BIOINFORMATICS , pp. 154-159
    
    
73. Paweł Mackiewicz, Mateusz Baca, Danijela Popović, Paweł Socha, Krzysztof Stefaniak, Adrian Marciszak, Adam Nadachowski (2017) Estimating the extinction time of two cave bears Acta zoologica cracoviensia 60 (2) , pp. 1-14
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74. Juliane Schiebel, Alexander Böhm, Jörg Nitschke, Michał Burdukiewicz, Jörg Weinreich, Aamir Ali, Dirk Roggenbuck, Stefan Rödiger, Peter Schierack (2017) Genotypic and Phenotypic Characteristics Associated with Biofilm Formation by Human Clinical Escherichia coli Isolates of Different Pathotypes. Applied and Environmental Microbiology 83 (24) , pp. e01660-17
    
    
75. Stefan Rödiger, Michał Burdukiewicz, Andrej-Nikolai Spiess, Konstantin Blagodatskikh (2017) Enabling reproducible real-time quantitative PCR research: the RDML package. Bioinformatics 33 (24) , pp. 4012-4014
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76. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2017) The complete mitochondrial genome of red-fronted parrot (Poicephalus gulielmi) revealed a new gene rearrangement within the order Psittaciformes. Mitochondrial DNA Part B-Resources 2 (2) , pp. 833-835
    
    
77. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2017) Complete mitochondrial genome of bronze-winged parrot (Pionus chalcopterus chalcopterus, Psittaciformes). Mitochondrial DNA Part B-Resources 2 (2) , pp. 744-746
    
    
78. Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska (2017) Amyloidogenic motifs revealed by n-gram analysis. Scientific Reports 7 (1) , pp. 12961
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79. Mariusz Wszołek, Krzysztof Moszczyński, Paweł Mackiewicz (2017) Wpływ barwy i etykiety opakowań na postrzeganie produktu – wyniki badań empirycznych. W: Michał Grecha, Annette Siemes, Mariusz Wszołek (red.), Badanie i Projektowanie Komunikacji 6. Instytut Dziennikarstwa i Komunikacji Społecznej, Uniwersytet Wrocławski, Wrocław , pp. 77-122, ISBN: 978-83-65705-26-6
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80. Andrzej Bodył, Paweł Mackiewicz, Jakub Cieśla (2017) Endosymbiotic Theory: Models and Challenges. Reference Module in Life Sciences; Update of A. Bodył, P. Mackiewicz Endosymbiotic Theory Brenner's Encyclopedia of Genetics , pp. 1-12
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81. Mateusz Baca, Adam Nadachowski, Grzegorz Lipecki, Paweł Mackiewicz, Adrian Marciszak, Danijela Popović, Paweł Socha, Krzysztof Stefaniak, Piotr Wojtal (2017) Impact of climatic changes in the Late Pleistocene on migrations and extinction of mammals in Europe: four case studies. Geological Quarterly 61 (2) , pp. 291–304
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82. Joanna Zareba, Paweł Błażej, Agnieszka Łaszkiewicz, Lukasz Sniezewski, Michał Majkowski, Sylwia Janik, Małgorzata Cebrat (2017) Uneven distribution of complementary sex determiner (csd) alleles in Apis mellifera population Scientific Reports 7 (1) , pp. 2317
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83. Izabela Nowak, Aleksandra Bylińska, Karolina Wilczyńska, Andrzej Wiśniewski, Andrzej Malinowski, Jacek R. Wilczyński, Paweł Radwan, Michał Radwan, Ewa Barcz, Rafał Płoski, Hanna Motak-Pochrzęst, Małgorzata Banasik, Maciej Sobczyński, Piotr Kuśnierczyk (2017) The methylenetetrahydrofolate reductase c.c.677 C>T and c.c.1298 A>C polymorphisms in reproductive failures: Experience from an RSA and RIF study on a Polish population PLoS One 12 (10) , pp. e0186022
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84. Marta Wagner, Maciej Sobczyński, Małgorzata Bilińska, Anna Pokryszko-Dragan, Małgorzata Cyrul, Piotr Kuśnierczyk, Monika Jasek (2017) Preliminary Study on the Role of TMEM39A Gene in Multiple Sclerosis J Mol Neurosci 62 (2) , pp. 181-187
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85. Marta Sochocka, Maciej Sobczyński, Aleksandra Sender-Janeczek, Katarzyna Zwolińska, Olga Błachowicz, Tomasz Tomczyk, Marek Ziętek, Jerzy Leszek (2017) Association between Periodontal Health Status and Cognitive Abilities. The Role of Cytokine Profile and Systemic Inflammation Curr Alzheimer Res 14 (9) , pp. 978-990
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86. Małgorzata Proćków, Elżbieta Kuźnik-Kowalska, Paweł Mackiewicz (2017) The influence of climate on shell variation in Trochulus striolatus (C. Pfeiffer, 1828) (Gastropoda: Hygromiidae) and its implications for subspecies taxonomy Annales Zoologici 67 (2) , pp. 199-220
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87. Małgorzata Proćków, Elżbieta Kuźnik-Kowalska, Paweł Mackiewicz (2017) Phenotypic plasticity can explain evolution of sympatric polymorphism in the hairy snail Trochulus hispidus (Linnaeus, 1758) Current Zoology 63 (4) , pp. 389-402
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88. Przemysław Gagat, Dorota Mackiewicz, Paweł Mackiewicz (2017) Peculiarities within peculiarities - dinoflagellates and their mitochondrial genomes Mitochondrial DNA Part B: Resources 2 (1) , pp. 191-195
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89. Adam Dawid Urantówka, Paweł Mackiewicz, Tomasz Strzała (2017) Complete mitochondrial genome of Blue-and-yellow Macaw (Ara ararauna): the species morphologically similar to Blue-throated Macaw (Ara glaucogularis) Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis 28 (3) , pp. 307-308
    
    
90. Adam Dawid Urantówka, Paweł Mackiewicz (2017) Complete mitochondrial genome of Blue-winged Macaw (Primolius maracana) Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis 28 (2) , pp. 275-276
    
    
91. Adam Dawid Urantówka, Tomasz Strzała, Paweł Mackiewicz (2017) Complete mitochondrial genome of golden conure (Guaruba guarouba) Mitochondrial DNA Part B: Resources 2 (1) , pp. 33-34
    
    
92. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2017) Complete mitochondrial genome of chestnut-fronted macaw (Ara severus, Psittaciformes) Mitochondrial DNA Part B: Resources 2 (1) , pp. 35-36
    
    
93. Małgorzata Proćków, Tomasz Strzała, Elżbieta Kuźnik-Kowalska, Jarosław Proćkow, Paweł Mackiewicz (2017) Ongoing Speciation and Gene Flow between Taxonomically Challenging Trochulus Species Complex (Gastropoda: Hygromiidae) PLoS One 12 (1) , pp. e0170460
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94. Dariusz Sztafrowski, Anna Aksamit-Stachurska, Kamil Kostyn, Paweł Mackiewicz, Marcin Łukaszewicz (2017) Electromagnetic Field Seems to Not Influence Transcription via CTCT Motif in Three Plant Promoters. Frontiers in Plant Science 8 () , pp. 178
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95. Paweł Błażej, Małgorzata Wnętrzak, Małgorzata Grabińska, Paweł Mackiewicz (2017) Representations of Search Spaces in the Problem of Mutational Pressure Optimization According to Protein-Coding Sequences. Journal of Computational Biology 24 (11) , pp. 1089–1098
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96. Tony Silva, Antonio Guzmán, Adam Dawid Urantówka, Paweł Mackiewicz (2017) A new parrot taxon from the Yucatán Peninsula, Mexico-its position within genus Amazona based on morphology and molecular phylogeny PeerJ. Erratum in: PeerJ. 2017 Sep 12;5 5 () , pp. e3475
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97. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2017) The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes BMC Evolutionary Biology 17 (1) , pp. 166
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98. Paweł Błażej, Dorota Mackiewicz, Małgorzata Wnętrzak, Paweł Mackiewicz (2017) The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons. G3 (Bethesda) 7 (3) , pp. 967-981
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99. Paweł Błażej, Dorota Mackiewicz, Małgorzata Grabińska, Małgorzata Wnętrzak, Paweł Mackiewicz (2017) Optimization of amino acid replacement costs by mutational pressure in bacterial genomes. Scientific Reports 7 (1) , pp. 1061
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100. Paweł Mackiewicz, Magdalena Moska, Heliodor Wierzbicki, Przemysław Gagat, Dorota Mackiewicz (2017) Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group PLoS One 12 (6) , pp. e0179760
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101. Andrzej Bodył, Jakub Cieśla, Paweł Mackiewicz, Przemysław Gagat (2017) Cyanobacterial Endosymbionts of Paulinella Chromatophora Shed New Light on the Birth of Cellular Organelles. In: M. Grube, J. Seckbach and L. Muggia (eds), Algal and Cyanobacteria Symbioses, World Scientific Punlishing Europe Ltd., London , pp. 279-328, ISBN: 978-1-78634-057-3
     
     
102. Przemysław Gagat, Paweł Mackiewicz (2017) Cymbomonas tetramitiformis - a peculiar prasinophyte with a taste for bacteria sheds light on plastid evolution. Symbiosis 71 () , pp. 1-7
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103. Krzysztof Cebrat, Maciej Sobczyński (2016) Scaling Laws in City Growth: Setting Limitations with Self-Organizing Maps PLoS One 11 (12) , pp. e0168753.
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104. Andrej-Nikolai Spiess, Stefan Rödiger, Michał Burdukiewicz, Thomas Volksdorf, Joel Tellinghuisen (2016) System-specific periodicity in quantitative real-time polymerase chain reaction data questions threshold-based quantitation. Scientific Reports 6 () , pp. 38951
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105. Adam Dawid Urantówka, Paweł Mackiewicz (2016) Complete mitochondrial genome of white-eyed parakeet (Psittacara leucophthalmus): the basal species to other Psittacara. Mitochondrial DNA Part B: Resources 1 (1) , pp. 895–897
     
     
106. Adam Dawid Urantówka, Paweł Mackiewicz (2016) The first complete mitochondrial genome sequence from the blue-headed parrot (Pionus menstruus menstruus): a representative for the genus. Mitochondrial DNA Part B: Resources 1 (1) , pp. 891–892
     
     
107. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2016) Complete mitochondrial genome of the greater Antillean parrot Amazona ventralis (Hispaniolan amazon). Mitochondrial DNA Part B: Resources 1 (1) , pp. 864–866
     
     
108. Adam Dawid Urantówka, Aleksandra Kroczak, Tomasz Strzała, Paweł Mackiewicz (2016) The first complete genome of ‘true’ Aratinga genus in comparison to mitogenomes of other parrots from Arini tribe. Mitochondrial DNA Part B: Resources 1 (1) , pp. 853–855
     
     
109. Urszula Ratajczak, Andrey V. Shpansky, Dmitriy G. Malikov, Krzysztof Stefaniak, Adam Nadachowski, Piotr Wojtal, Bogdan Ridush, Tatiana V. Krakhmalnaya, Vadim Stepanchuk, Paweł Mackiewicz (2016) Quaternary skulls of the saiga antelope from Eastern Europe and Siberia: Saiga borealis versus Saiga tatarica – One species or two? Quaternary International 420 () , pp. 329-347
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110. Monika Jasek, Agnieszka Bojarska-Junak, Waldemar Wagner, Maciej Sobczyński, Dariusz Wołowiec, Jacek Roliński, Lidia Karabon, Piotr Kuśnierczyk (2016) Association of variants in BAFF (rs9514828 and rs1041569) and BAFF-R (rs61756766) genes with the risk of chronic lymphocytic leukemia Tumor Biology 37 (10) , pp. 13617-13626
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111. Mateusz Baca, Danijela Popović, Krzysztof Stefaniak, Adrian Marciszak, Mikołaj Urbanowski, Adam Nadachowski, Paweł Mackiewicz (2016) Retreat and extinction of the Late Pleistocene cave bear (Ursus spelaeus sensu lato) The Science of Nature - Naturwissenschaften 103 (11-12) , pp. 92
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112. Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska (2016) Prediction of amyloidogenicity based on the n-gram analysis PeerJ Preprints , pp. e2390v1
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113. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz (2016) Breaking the endosymbiont-organelle border: the case of Paulinella chromatophora Endocytobiosis and Cell Research 27 (3) , pp. 45-51
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114. Michał Burdukiewicz, Stefan Rödiger, Piotr Sobczyk, Mario Menschikowski, Peter Schierack, Paweł Mackiewicz (2016) Methods for comparing multiple digital PCR experiments Biomolecular detection and quantification 9 () , pp. 14-19
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115. Paweł Błażej, Małgorzata Wnętrzak, Paweł Mackiewicz (2016) The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization Biosystems 150 () , pp. 61-72
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116. Magdalena Donczew, Paweł Mackiewicz, Agnieszka Wróbel, Klas Flärdh, Jolanata Zakrzewska-Czerwińska, Dagmara Jakimowicz (2016) ParA and ParB coordinate chromosome segregation with cell elongation and division during Streptomyces sporulation. Open Biology 6 (4) , pp. 150263
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117. Adam Dawid Urantówka, Paweł Mackiewicz, Tomasz Strzała (2016) Complete mitochondrial genome of Mitred conure (Psittacara mitratus): Its comparison with mitogenome of Socorro conure (Psittacara brevipes). Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis 27 (5) , pp. 3363-3364
     
     
118. Adam Dawid Urantówka, Paweł Mackiewicz, Aleksandra Kroczak, Tomasz Strzała (2016) Complete mitochondrial genome of Red-throated conure (Psittacara rubritorquis): Its comparison with mitogenome of Socorro conure (Psittacara brevipes). Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis 27 (5) , pp. 3354-3355
     
     
119. Przemysław Gagat, Paweł Mackiewicz (2016) Endosymbioza Wiedza i Życie 6/2016 () , pp. 42-47
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120. Paweł Mackiewicz (2015) Genomy jako dynamiczne struktury biologiczne W: Ewa Dobierzewska-Mozrzymas, Adam Jezierski (red.) Przyroda, ewolucja, kultura. Studium Generale Universitatis Wratislaviensis im. Profesora Jana Mozrzymasa, Tom XIX; Oficyna Wydawnicza ATUT, Wrocław , pp. 187-207, ISBN: 978-83-7977-158-5
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121. Marta Wagner, Maciej Sobczyński, Małgorzata Bilinska, Anna Pokryszko-Dragan, Małgorzata Cyrul, Piotr Kuśnierczyk, Monika Jasek (2015) MS risk allele rs1883832T is associated with decreased mRNA expression of CD40 J. Mol. Neurosci. 56 (3) , pp. 540-545
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122. Marta Sochocka, Tomasz Tomczyk, Maciej Sobczyński, Bożena Szermer-Olearnik, Janusz Boratyński (2015) The kinetics of Escherichia coli B growth and bacteriophage T4 multiplication in SM-1 novel minimal culture medium J. Gen. Appl. Microbiol. 61 (3) , pp. 75-81
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123. Monika Jasek, Marta Wagner, Maciej Sobczyński, Dariusz Wolowiec, Kazimierz Kuliczkowski, Dariusz Woszczyk, Marek Kiełbiński, Piotr Kuśnierczyk, Irena Frydecka, Lidia Karabon (2015) Polymorphisms in genes of the BAFF/APRIL system may constitute risk factors of B-CLL - a preliminary study on a Polish population Tissue Antigens 86 (4) , pp. 279-284
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124. Marta Wagner, Maciej Sobczyński, Lidia Karabon, Małgorzata Bilinska, Anna Pokryszko-Dragan, Edyta Pawlak-Adamska, Małgorzata Cyrul, Piotr Kuśnierczyk, Monika Jasek (2015) Polymorphisms in CD28, CTLA-4, CD80 and CD86 genes may influence the risk of multiple sclerosis and its age of onset Journal of Neuroimmunology 288 () , pp. 79–86
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125. Stefan Rödiger, Michał Burdukiewicz, Konstantin Blagodatskikh, Michael Jahn, Peter Schierack (2015) R as an Environment for the Reproducible Analysis of DNA Amplification Experiments R Journal 7 (1) , pp. 127-150
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126. Stefan Rödiger, Michał Burdukiewicz, Peter Schierack (2015) chipPCR: an R Package to Pre-Process Raw Data of Amplification Curves Bioinformatics 31 (17) , pp. 2900-2902
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127. Rafał Kolenda, Michał Burdukiewicz, Peter Schierack (2015) A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli Frontiers in Cellular and Infection Microbiology 5 () , pp. 23
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128. Andrej-Nikolai Spiess, Claudia Deutschmann, Michał Burdukiewicz, Ralf Himmelreich, Katia Klat, Peter Schierack, Stefan Rödiger (2015) Impact of Smoothing on Parameter Estimation in Quantitative DNA Amplification Experiments Clinical Chemistry 61 (2) , pp. 379-388
     
     
129. Paweł Błażej, Błażej Miasojedow, Małgorzata Grabińska, Paweł Mackiewicz (2015) Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes PLoS One 10 (6) , pp. e0130411
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130. Adrian Marciszak, Krzysztof Stefaniak, Paweł Mackiewicz, Bogdan Ridush (2015) Ursus arctos l., 1758 from Bukovynka Cave (w Ukraine) in an overview on the fossil brown bears size variability based on cranial material. Quaternary International 357 () , pp. 136-148
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131. Anna Jakubiak-Augustyn, Renata Sokolik, Maria Duk, Jacek Szechiński, Piotr Wiland, Elwira Lisowska, Maciej Sobczyński, Hubert Krotkiewski (2014) Serum IgG galactosylation in psoriatic arthritis patients undergoing a biological treatment. A preliminary report Reumatologia 52 (6) , pp. 369–376
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132. Paweł Mackiewicz, Przemysław Gagat (2014) Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus? Acta Societatis Botanicorum Poloniae 83 (4) , pp. 263–280
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133. Przemysław Gagat, Paweł Mackiewicz (2014) Protein translocons in photosynthetic organelles of Paulinella. Acta Societatis Botanicorum Poloniae 83 (4) , pp. 399–407
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134. Justyna Ciuraszkiewicz, Michał Śmiga, Paweł Mackiewicz, Anna Gmiterek, Marcin Bielecki, Mariusz Olczak, Teresa Olczak (2014) Fur homolog regulates Porphyromonas gingivalis virulence under low-iron/heme conditions through a complex regulatory network. Molecular Oral Microbiology 29 (6) , pp. 333-353
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135. Waldemar Wagner, Małgorzata Bilinska, Anna Pokryszko-Dragan, Maciej Sobczyński, Małgorzata Cyrul, Piotr Kuśnierczyk, Monika Jasek (2014) ALCAM and CD6 — multiple sclerosis risk factors. Journal of Neuroimmunology 276 () , pp. 98–103
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136. Małgorzata Proćków, Tomasz Strzała, Elżbieta Kuźnik-Kowalska, Paweł Mackiewicz (2014) Morphological similarity and molecular divergence of Trochulus striolatus and T. montanus, and their relationship to sympatric congeners (Gastropoda: Pulmonata: Hygromiidae). Systematics and Biodiversity 12 (3) , pp. 366-384
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137. Danijela Popović, Hanna Panagiotopoulou, Mateusz Baca, Krzysztof Stefaniak, Paweł Mackiewicz, Daniel Makowiecki, Tim L. King, Jakub Gruchota, Piotr Węgleński, Anna Stankovic (2014) The history of sturgeon in the Baltic Sea. Journal of Biogeography 41 (8) , pp. 1590-1602
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138. Mateusz Baca, Paweł Mackiewicz, Anna Stankovic, Danijela Popović, Krzysztof Stefaniak, Kinga Czarnogórska, Adam Nadachowski, Michał Gąsiorowski, Helena Hercman, Piotr Węgleński (2014) Ancient DNA and dating of cave bear remains from Niedźwiedzia Cave suggest early appearance of Ursus ingressus in Sudetes. Quaternary International 339-340 () , pp. 217-223
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139. Adam Dawid Urantówka, Paweł Mackiewicz, Tomasz Strzała (2014) Phylogeny of Amazona barbadensis and the Yellow-Headed Amazon Complex (Aves: Psittacidae): A New Look at South American Parrot Evolution. PLoS ONE 9 (5) , pp. e97228
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140. Marta Sochocka, Agnieszka Taboł, Maciej Sobczyński, Ewa Zaczyńska, Anna Czarny, Jerzy Leszek (2014) Innate antiviral immunity of human PBLs and immunoregulatory activity of EGb 761 Central European Journal of Biology 9 (4) , pp. 359-366
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141. Wioletta Zagórska, Katarzyna Grzela, Marek Kulus, Maciej Sobczyński, Tomasz Grzela (2014) Nitric oxide, IL-6 and IL-13 are increased in the exhaled breath condensates of children with allergic rhinitis Acta Pædiatrica 103 () , pp. 148–153
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142. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2014) Studies of Mutation Accumulation in Three Codon Positions using Monte Carlo Simulations and Metropolis-Hastings Algorithm Proceedings of the BIOSTEC 2014, 7th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2014, 5th International Conference on Bioinformatics Models, Methods and Algorithms, Angers, Loire Valley, France, 3-6 March, 2014 , pp. 245-252, ISBN: 978-989-758-012-3
     
     
143. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2014) Tertiary Plastid Endosymbioses in Dinoflagellates In: Wolfgang Löffelhardt (ed) Endosymbiosis Springer Verlag, Wien , pp. 233-290, ISBN: 978-3-7091-1302-8
     
     
144. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2013) Two algorithms based on Markov chains and their application to recognition of protein coding genes in prokaryotic genomes. Applicationes Mathematicae 40 (4) , pp. 447–457
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145. Katarzyna Zwolińska, Brygida Knysz, Jacek Gąsiorowski, Monika Pazgan-Simon, Andrzej Gładysz, Maciej Sobczyński, Egbert Piasecki (2013) Frequency of Human Endogenous Retroviral Sequences (HERV) K113 and K115 in the Polish Population, and Their Effect on HIV Infection PLoS One 8 (10) , pp. e77820
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146. Wioletta Zagórska, Katarzyna Grzela, Marek Kulus, Maciej Sobczyński, Tomasz Grzela (2013) Increased cys-leukotrienes in exhaled breath condensate and decrease of PNIF after intranasal allergen challenge support the recognition of allergic rhinitis in children Arch. Immunol. Ther. Exp. (Warsz.) 61 (4) , pp. 327-332
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147. Katarzyna Zwolińska, Brygida Knysz, Katarzyna Rybka, Monika Pazgan-Simon, Jacek Gąsiorowski, Maciej Sobczyński, Andrzej Gładysz, Egbert Piasecki (2013) Protective effect of CCR5-Δ32 against HIV infection by the heterosexual mode of transmission in a Polish population AIDS Res. Hum. Retroviruses 29 (1) , pp. 54-60
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148. Małgorzata Proćków, Paweł Mackiewicz, Joanna Pieńkowska (2013) Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa. Zoological Journal of the Linnean Society 169 () , pp. 124–143
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149. Paweł Mackiewicz, Andrzej Bodył, Krzysztof Moszczyński (2013) The case of horizontal gene transfer from bacteria to the peculiar dinoflagellate plastid genome. Mobile Genetic Elements 3 (4) , pp. e25845
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150. Maciej Sobczyński, Paweł Mackiewicz (2013) Analysis of Relationship Between Amino Acid Composition of Proteins and Environmental Features of Microorganisms Using Evolutionary Algorithm and Self-Organizing Maps. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO'13, July 6–10, 2013, Amsterdam, The Netherlands. Companion ACM 978-1-4503-1964-5/13/07 , pp. 45-46, ISBN: 978-1-4503-1964-5
     
     
151. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat, Małgorzata Wańczyk (2013) Using Evolutionary Algorithms in Finding of Optimized Nucleotide Substitution Matrices. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO'13, July 6–10, 2013, Amsterdam, The Netherlands. Companion ACM 978-1-4503-1964-5/13/07 , pp. 41-42, ISBN: 978-1-4503-1964-5
     
     
152. Dorota Mackiewicz, Paulo Murilo de Oliveira, Suzana Moss de Oliveira, Stanisław Cebrat (2013) Distribution of Recombination Hotspots in the Human Genome – A Comparison of Computer Simulations with Real Data PLoS ONE 8 (6) , pp. e65272
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153. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz (2013) How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies. Biology Direct 8 (1) , pp. 18
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154. Anna Gmiterek, Halina Wójtowicz, Paweł Mackiewicz, Małgorzata Radwan-Oczko, Małgorzata Kantorowicz, Maria Chomyszyn-Gajewska, Magdalena Frąszczak, Marcin Bielecki, Mariusz Olczak, Teresa Olczak (2013) The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis. PLoS ONE 8 (7) , pp. e67719
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155. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2013) Nucleomorph Genomes In: S. Maloy and K. Hughes (eds.) Brenner's Encyclopedia of Genetics, 2nd Edition. Volume 5. Elsevier Press , pp. 128-133, ISBN: 9780123749840
     
     
156. Andrzej Bodył, Paweł Mackiewicz (2013) Endosymbiotic Theory In: S. Maloy and K. Hughes (eds.) Brenner's Encyclopedia of Genetics, 2nd Edition. Volume 2. Elsevier Press , pp. 484-492, ISBN: 9780123749840
     
     
157. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2013) Simulation of Prokaryotic Genome Evolution Subjected to Mutational Pressures Associated with DNA Replication. Communications in Computer and Information Science 357 () , pp. 150–161, ISBN: 978-3-642-38255-0
     
     
158. Paweł Błażej, Paweł Mackiewicz, Małgorzata Wańczyk, Stanisław Cebrat (2013) Evolution of Bacterial Genome under Changing Mutational Pressure Computer Simulation Studies. Proceedings of the BIOSTEC 2013, 6th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2013, 4th International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11-14 February, 2013 , pp. 272-277, ISBN: 978-989-8565-35-8
     
     
159. Stanisław Cebrat (2012) Pytania o bariery w metodzie in vitro w: Przyroda, ekologia, kultura, Ewa Dobierzewska-Mozrzymas, Adam Jezierski (red.), Studium Generale, Tom XVI
     
     
160. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2012) Protein import into the photosynthetic organelles of Paulinella chromatophora and its implications for primary plastid endosymbiosis. Symbiosis 58 (1-3) , pp. 99-107
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161. Ewelina A. Wójcik, Anna Brzostek, Albino Bacolla, Paweł Mackiewicz, Karen M. Vasquez, Małgorzata Korycka-Machala, Adam Jaworski, Jarosław Dziadek (2012) Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria. PLoS One 7 (12) , pp. e51064
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162. Mateusz Baca, Anna Stankovic, Krzysztof Stefaniak, Adrian Marciszak, Michael Hofreiter, Adam Nadachowski, Piotr Węgleński, Paweł Mackiewicz (2012) Genetic analysis of cave bear specimens from Niedźwiedzia Cave, Sudetes, Poland. Palaeontologia Electronica 15 (2) , pp. 21A
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163. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2012) Influence of mutational pressure on protein coding sequences in bacterial genomes. Proceedings of the Eighteenth National Conference on Applications of Mathematics in Biology and Medicine. Krynica Morska, 23-27 September 2012 , pp. 136-141, ISBN: 978-83-7348-434-4
     
     
164. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012) New approach in coding signal recognition using homogeneous Markov chains independently for three codon positions. International Journal of Bioscience, Biochemistry and Bioinformatics 3 (2) , pp. 183-187
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165. Andrzej Bodył, Paweł Mackiewicz, Przemysław Gagat (2012) Organelle evolution: Paulinella breaks a paradigm. Current Biology 22 (9) , pp. 304-306
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166. Daria Augustyniak, Adam Jankowski, Paweł Mackiewicz, Agnieszka Skowyra, Jan Gutowicz, Zuzanna Drulis-Kawa (2012) Innate immune properties of selected human neuropeptides against Moraxella catarrhalis and nontypeable Haemophilus influenzae. BMC Immunology 13 (1) , pp. 24
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167. Stanisław Cebrat, Wojciech Waga, Dietrich Stauffer (2012) The role of haplotype complementation and purifying selection in the genome evolution Advances in Complex Systems 15 (1) , pp. 1250041
     
     
168. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2012) Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. Theory in Biosciences 131 (1) , pp. 1-18
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169. Krzysztof Moszczyński, Paweł Mackiewicz, Andrzej Bodył (2012) Evidence for horizontal gene transfer from bacteroidetes bacteria to dinoflagellate minicircles. Molecular Biology and Evolution 29 (3) , pp. 887-892
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170. Stanisław Cebrat, Małgorzata Cebrat (2012) Człowiek przejrzysty czyli jego problemy z własną genetyką Wydawnictwo KUBAJAK , ISBN: 978-83-62501-14-4
     
     
171. Bartłomiej Balcerek, Bartosz Szurgot, Mariusz Uchroński, Wojciech Waga (2012) ACARM-ng: Next Generation Correlation Framework Lecture Notes in Computer Science (7136) , pp. 114-127
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172. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012) How to deal with small Open Reading Frames? Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 , pp. 246-250
     
     
173. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012) Simulation of bacterial genome evolution under replicational mutational pressures. Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 , pp. 51-57
     
     
174. Marian Patrzałek, Piotr Albrecht, Maciej Sobczyński (2011) Indirect, population effect of mass pneumococcal vaccinations (PCV7) on all-cause pneumonia incidence in Kielce, Poland. Przegl. Epidemiol. 65 (1) , pp. 51-56
     
     
175. Anna Stankovic, Karolina Doan, Paweł Mackiewicz, Bogdan Ridush, Mateusz Baca, Robert Gromadka, Paweł Socha, Piotr Węgleński, Adam Nadachowski, Krzysztof Stefaniak (2011) First ancient DNA sequences of the Late Pleistocene red deer (Cervus elaphus) from the Crimea, Ukraine. Quaternary International 245 (2) , pp. 262-267
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176. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2011) Comparison of two algorithms based on Markov chains applied in recognition of protein coding sequences in prokaryotes. Proceedings of the Seventeenth National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Koscielisko, 1-6 September 2011 17 () , pp. 118-123, ISBN: 978-83-932893-0-1
     
     
177. Maciej Sobczyński, Paweł Mackiewicz (2011) Application of self-organizing maps to description of relationship between amino acid composition of proteins and ecological properties of microorganisms. Proceedings of the Seventeenth National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Kościelisko, 1-6 September 2011 17 () , pp. 96-101
     
     
178. Stanisław Cebrat (2011) Nauka, pseudonauka i ART Nauka 1 () , pp. 105-114
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179. Stanisław Cebrat, Dietrich Stauffer, Jorge S. Sa Martins, Suzana Moss de Oliveira, Paulo Murilo de Oliveira (2011) Modelling survival and allele complementation in the evolution of genomes with polymorphic loci Theory in Biosciences 130 (2) , pp. 135-143
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180. Anna Zawilak-Pawlik, Rafał Donczew, Szymon Szafrański, Paweł Mackiewicz, Laurent Terradot, Jolanata Zakrzewska-Czerwińska (2011) DiaA/HobA and DnaA: a pair of proteins co-evolved to cooperate during bacterial orisome assembly. J. Mol. Biol. 408 (2) , pp. 238-251
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181. Zuzanna Drulis-Kawa, Paweł Mackiewicz, Agata Kęsik-Szeloch, Ewa Maciaszczyk-Dziubińska, Beata Weber-Dąbrowska, Agata Dorotkiewicz-Jach, Daria Augustyniak, Grażyna Majkowska-Skrobek, Tomasz Bocer, Joanna Empel, Andrew M. Kropinski (2011) Isolation and characterisation of KP34-a novel φKMV-like bacteriophage for Klebsiella pneumoniae. Appl. Microbiol. Biotechnol. 90 (4) , pp. 1333-1345
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182. Dietrich Stauffer, Stanisław Cebrat, T.J.P. Penna, A.O. Sousa (2011) Love kills: simulations in Penna ageing model International Journal of Modern Physics C 22 (3) , pp. 283-295
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183. Dietrich Stauffer, Stanisław Cebrat (2011) Haplotype complementarity under mutational pressure Frontiers in Bioscience (Schol Ed) S3 (1) , pp. 408-415
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184. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2011) Algorithm for finding coding signal using homogeneous Markov chains independently for three codon positions Proceedings of the 2011 International Conference on Bioinformatics and Computational Biology (ICBCB 2011), Haikou, China, 22-24 February, 2011 , pp. 20-24
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185. Stanisław Cebrat, Przemysław Biecek (2011) Dlaczego chromosom Y jest krótki a kobiety żyją dłużej? W: Wymiary kobiecości i męskości: od psychobiologii do kultury (red. B. Bartosz), Warszawa: Eneteia - Wydawnictwo Psychologii i Kultury; Wrocław: Instytut Psychologii Wydziału Nauk Historycznych i Pedagogicznych Uniwersytetu Wrocławskiego (Seria Akademicka) , pp. 75-82
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186. Stanisław Cebrat (2010) Początek życia człowieka - miłość czy "in vitro"? W: Misterium miłości (red. Waldemar Irek), Sympozja i Sesje Naukowe, Papieski Wydział Teologiczny we Wrocławiu, Wrocław 19 () , pp. 159-166
     
     
187. Paweł Mackiewicz, Teresa Wiszniowska, Anthony J. Olejniczak, Krzysztof Stefaniak, Paweł Socha, Adam Nadachowski (2010) Analysis of dental enamel thickness in bears with special attention to Ursus spelaeus and U. wenzensis (=minimus) in comparison to selected representatives of mammals. In: D. Nowakowski (ed.) Morphology and systematics of fossil vertebrates, DN Publisher, Wrocław , pp. 60-77, ISBN: 987-83-928020-1-3
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188. Teresa Wiszniowska, Paweł Mackiewicz, Krzysztof Stefaniak, Paweł Socha, Dariusz Nowakowski, Adam Nadachowski (2010) Dental enamel structure in fossil bears Ursus spelaeus and U. wenzensis (=minimus) in comparison to selected representatives of other Carnivora. In: D. Nowakowski (ed.) Morphology and systematics of fossil vertebrates, DN Publisher, Wroclaw , pp. 125-142, ISBN: 987-83-928020-1-3
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189. Dorota Mackiewicz, Wojciech Waga, Stanisław Cebrat (2010) Ewolucja chromosomów eukariotycznych - od baz danych do modeli komputerowych i z powrotem (Evolution of eukaryotic chromosomes - from databases to computer modeling). Biotechnologia 4 (91) , pp. 131-145
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190. Paweł Mackiewicz, Przemysław Gagat, Andrzej Bodył (2010) Genomika protistów - bardzo zrónicowanych, ale słabo poznanych eukariotów (Genomics of Protists - very diversified but poorly studied eukaryotes). Biotechnologia 4 (91) , pp. 91-130
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191. Katarzyna Rydzanicz, Maciej Sobczyński, Katarzyna Guz-Regner (2010) Comparison of the Activity and Persistence of Microbial Insecticides Based on Bacillus thuringiensis israelensis and Bacillus sphaericus in Organic Polluted Mosquito-Breeding Sites Polish Journal of Environmental Studies 19 (6) , pp. 1317-1323
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192. Marta Sochocka, Ewa Zaczyńska, Agnieszka Taboł, Anna Czarny, Jerzy Leszek, Maciej Sobczyński (2010) The influence of donepezil and EGb 761 on the innate immunity of human leukocytes Effect on the NF-κB system. International Immunopharmacology 10 () , pp. 1505-1513
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193. Jakub Kowalski, Stanisław Cebrat (2010) Evolution of the recombination rate distribution along chromosome in Penna model. Proceedings of the Sixteen National Conference on Applications of Mathematics in Bology and Medicine, Krynica, September 14–18, 2010 , pp. 71-75
     
     
194. Paweł Mackiewicz, Andrzej Bodył (2010) A hypothesis for import of the nuclear-encoded PsaE protein of Paulinella chromatophora (Cercozoa, Rhizaria) into its cyanobacterial endosymbionts/plastids via the endomembrane system Journal of Phycology 46 (5) , pp. 847-859
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195. Dorota Mackiewicz, Marta Zawierta, Wojciech Waga, Stanisław Cebrat (2010) Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length Journal of Theoretical Biology 267 (2) , pp. 186-192
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196. Marian Patrzałek, Piotr Albrecht, Maciej Sobczyński (2010) Significant decline in pneumonia admission rate after the introduction of routine 2+1 dose schedule heptavalent pneumococcal conjugate vaccine (PCV7) in children under 5 years of age in Kielce, Poland. Eur. J. Clin. Microbiol. Infect. Dis. 29 (7) , pp. 787-792
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197. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2010) Using the genetic code wisdom for recognizing protein coding sequences. Proceedings of the 2010 International Conference on Bioinformatics & Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, Vol. 1 () , pp. 302-305
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198. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2010) Comparative genomic studies suggest that the cyanobacterial endosymbionts of the amoeba Paulinella chromatophora possess an import apparatus for nuclear-encoded proteins. Plant Biology 12 () , pp. 639-649
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199. Andrzej Bodył, Paweł Mackiewicz, Rafał Milanowski (2010) Did trypanosomatid parasites contain a eukaryotic alga-derived plastid in their evolutionary past? Journal of Parasitology 96 (2) , pp. 465-475
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200. Stanisław Cebrat (2009) Ab-zymy i Lamarck W: O przyrodzie i kulturze ed. E. Dobrzejewska-Mozrzymas, A. Jezierski, Wydawnictwo Uniwersytetu Wrocławskiego, Acta Universitatis Wratislaviensis 3123, Studium Generale 13 () , pp. 49-50
     
     
201. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2009) Early steps in plastid evolution: current ideas and controversies Bioessays 31 (11) , pp. 1219-1232
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202. Stanisław Cebrat (2009) Biologiczne argumenty przeciwko zapłodnieniu pozaustrojowemu w: Świętość ludzkiego życia. Wokół Instrukcji Dignitas personae. red. T. Reroń, Papieski Wydział Teologiczny we Wrocławiu, TUM Wydawnictwo Wrocławskiej Księgarni Archidiecezjalnej, Colloquia Wratislaviensia 3 () , pp. 99-109
     
     
203. Stanisław Cebrat, Dorota Mackiewicz, Wojciech Waga (2009) Komputerowe modelowanie ewolucji genomów KOSMOS 1-2 (58) , pp. 29-41
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204. Paweł Mackiewicz, Elżbieta Wyroba (2009) Phylogeny and evolution of Rab7 and Rab9 proteins. BMC Evolutionary Biology 9 (1) , pp. 101
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205. Andrzej Bodył, John W. Stiller, Paweł Mackiewicz (2009) Chromalveolate plastids: direct descent or multiple endosymbioses? Trends in Ecology and Evolution 24 (3) , pp. 119-121
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206. Stanisław Cebrat (2009) Czy ewolucja ewoluuje? W: O przyrodzie i kulturze ed. E. Dobrzejewska-Mozrzymas, A. Jezierski, Wydawnictwo Uniwersytetu Wrocławskiego, Acta Universitatis Wratislaviensis 3123, Studium Generale 13 () , pp. 69-78
     
     
207. Wojciech Waga, Marta Zawierta, Jakub Kowalski, Stanisław Cebrat (2009) Darwinian purifying selection versus complementig strategy in Monte Carlo simulations From Genetics to Mathematics - Series on Advances in Mathematics for Applied Sciences, ed. J. Miekisz, M. Lachowicz, World Scientific. (79) , pp. 70-102
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208. Agnieszka Łaszkiewicz, Przemysław Biecek, Stanisław Cebrat (2009) EVOLUTION OF THE AGE STRUCTURED POPULATIONS AND DEMOGRAPHY In: From Genetics to Mathematics - Series on Advances in Mathematics for Applied Sciences, ed J. Miekisz, M. Lachowicz. World Scientific (79) , pp. 35-70
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209. Dorota Mackiewicz, Stanisław Cebrat (2009) TO UNDERSTAND NATURE - COMPUTER MODELLING BETWEEN GENETICS AND EVOLUTION In: From Genetics to Mathematics (Series on Advances in Mathematics for Applied Sciences), ed. J. Miekisz, M. Lachowicz, World Scientific. (79) , pp. 1-33
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210. Stanisław Cebrat, Dietrich Stauffer (2009) Influence of a small fraction of individuals with enhanced mutations on a population genetic pool Int. J. Mod. Phys. C 20 (8) , pp. 1271-1280
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211. Jakub Kowalski, Wojciech Waga, Marta Zawierta, Stanisław Cebrat (2009) Phase transition in the genome evolution favours non-random distribution of genes on chromosomes Int. J. Mod. Phys. C 20 (8) , pp. 1299-1309
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212. Przemysław Biecek (2008) Przewodnik po pakiecie R Monografia, wyd. Oficyna Wydawnicza GiS, Wrocław , pp. pp.292
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213. Andrzej Bodył, Paweł Mackiewicz (2008) Were class C iron-containing superoxide dismutases of trypanosomatid parasites initially imported into a complex plastid? A hypothesis based on analyses of their N-terminal targeting signals. Parasitology 135 (9) , pp. 1101-1110
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214. Katarzyna Baldy-Chudzik, Paweł Mackiewicz, Michał Stosik (2008) Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo. Vet. Microbiol. 131 (1-2) , pp. 173-184
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215. Erika T. Quintana, Katarzyna Wierzbicka, Paweł Mackiewicz, Abdalla Osman, Ahmed H. Fahal, Mohamed E. Hamid, Jolanata Zakrzewska-Czerwińska, Luis A. Maldonado, Michael Goodfellow (2008) Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma. Antonie Van Leeuwenhoek 93 (3) , pp. 305-313
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216. Paweł Mackiewicz, Przemysław Biecek, Dorota Mackiewicz, Joanna Kiraga, Krystian Bączkowski, Maciej Sobczyński, Stanisław Cebrat (2008) Optimisation of asymmetric mutational pressure and selection pressure around the universal genetic code. Lecture Notes in Computer Science 5103 () , pp. 100 - 109
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217. Stanisław Cebrat (2008) Zapłodnienie in vitro – dylematy genetyka Znak (635)
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218. Stanisław Cebrat (2008) Skrupuły biologa (zapłodnienie in vitro) Tygodnik Powszechny 2 ()
     
     
219. Stanisław Cebrat, Dietrich Stauffer (2008) Gamete recognition and complementary haplotypes in sexual Penna ageing model International Journal of Modern Physics C 19 (2) , pp. 259-265
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220. Paulo Murilo de Oliveira, Suzana Moss de Oliveira, Dietrich Stauffer, Stanisław Cebrat, Andrzej Pękalski (2008) Does Sex Induce a Phase Transition? European Phys. J. B. 63 () , pp. 245-254
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221. Dietrich Stauffer, Stanisław Cebrat (2008) Sexual reproduction from the male (men) point of view Populations and Evolution (q-bio.PE) arXiv:0710.3988 , pp. 20 pages with many figures, draft for Windwer Summer School proceedings
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222. Marta Zawierta, Wojciech Waga, Dorota Mackiewicz, Przemysław Biecek, Stanisław Cebrat (2008) Phase Transition in Sexual Reproduction and Biological Evolution Int. J. Mod. Phys. C 6 (19) , pp. 917-936
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223. Przemysław Biecek, Stanisław Cebrat (2008) Why Y chromosome is shorter and women live longer? European Phys. J. B. (65) , pp. 149-153
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224. Katarzyna Bońkowska, Przemysław Biecek, Agnieszka Łaszkiewicz, Stanisław Cebrat (2008) Relationship between the selection pressure and the rate of mutation accumulation. W: Stochastic Models in Biological Sciences, eds. R. Bürger, Ch. Maes, J. Miękisz, Instytut Matematyczny PAN, Warszawa, Banach Center Publications 80 () , pp. 223 - 228
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225. Joanna Kiraga, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Przemysław Biecek, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2007) The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms. BMC Genomics 8 () , pp. 163
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226. Andrzej Bodył, Paweł Mackiewicz (2007) Analysis of the targeting sequences of an iron-containing superoxide dismutase (SOD) of the dinoflagellate Lingulodinium polyedrum suggests function in multiple cellular compartments. Arch. Microbiol. 187 (4) , pp. 281-296
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227. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2007) The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles? Trends Microbiol. 15 (7) , pp. 295-296
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228. Mirosław Roman Dudek, Stanisław Cebrat, Maria Kowalczuk, Paweł Mackiewicz, Aleksandra Nowicka, Dorota Mackiewicz, Małgorzata Dudkiewicz (2007) Information weights of nucleotides in DNA sequences. Computational Methods in Science and Technology 13 () , pp. 5-12
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229. Ewa Zaczyńska, Anna Czarny, Ewa A. Jankowska, Maciej Sobczyński, Piotr Ponikowski (2007) NF-κB expression in mononuclear cells from patients with chronic heart failure that observed in endotoxin tolerance. Central European Journal of Immunology 32 (4) , pp. 206-211
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230. Wojciech Waga, Dorota Mackiewicz, Marta Zawierta, Stanisław Cebrat (2007) Sympatric speciation as intrinsic property of expanding populations. Theory in Biosciences 126 () , pp. 53-59
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231. Diana Garncarz, Stanisław Cebrat, Dietrich Stauffer, Klaus Blindert (2007) Why are diploid genomes widespread and dominant mutations rare? Theory in Biosciences 126 () , pp. 47-53
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232. Katarzyna Bońkowska, Przemysław Biecek, Stanisław Cebrat (2007) Pandemics and immune memory in the noisy Penna model. Proc. SPIE, Noise and Fluctuation in Biological, Biophysical and Biomedical Systems 66020P-1-10 ()
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233. Stanisław Cebrat, Przemysław Biecek, Mateusz Kula, Katarzyna Bońkowska (2007) White noise and synchronization shaping the age structure of the human population. Proc. SPIE, Noise and Fluctuation in Biological, Biophysical and Biomedical Systems 66020O-1-9 ()
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234. Katarzyna Bońkowska, Mateusz Kula, Stanisław Cebrat, Dietrich Stauffer (2007) Inbreeding and outbreeding depressions in the Penna model as a result of crossover frequency. Int. J. Mod. Phys. C 18 (8) , pp. 1329-1338
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235. Andreas Baierl, Andreas Futschik, Małgorzata Bogdan, Przemysław Biecek (2007) Locating multiple interacting quantitative trait loci using robust model selection Computational Statistics and Data Analysis (51) , pp. 6423–6434
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236. Marta Zawierta, Przemysław Biecek, Wojciech Waga, Stanisław Cebrat (2007) The role of intragenomic recombination rate in the evolution of population's genetic pool Theory in Biosciences 125 (2) , pp. 123-132
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237. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (2006) Modeling gene's length distribution in genomes arXiv:q-bio/0607029 [q-bio.GN], Cornell University Library , pp. 1-7
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238. Magdalena Wołoszyńska, Beata Kmieć, Paweł Mackiewicz, Hanna Jańska (2006) Copy number of bean mitochondrial genes estimated by real-time PCR 3 does not correlate with the number of gene loci and transcript levels. Plant Molecular Biology 61 (1-2) , pp. 1-12
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239. Dorota Kiewra, Maciej Sobczyński (2006) Biometrical analysis of the common tick, Ixodes ricinus, in the Slęża Massif, Lower Silesia, Poland. Journal of Vector Ecology 31 (2) , pp. 239-244
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240. Katarzyna Bońkowska, Szymon Szymczak, Stanisław Cebrat (2006) Microscopic modeling the demographic changes. Int. J. Mod. Phys. C 17 (10) , pp. 1477-1484
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241. Dietrich Stauffer, Stanisław Cebrat (2006) Extinction in genetic bit string model with sexual recombination. Advances in Complex Systems (ACS) 9 (1-2) , pp. 147-156
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242. Stanisław Cebrat, Andrzej Pękalski, Fabian Scharf (2006) Monte Carlo simulations of the inside intron recombination. Int. J. Mod. Phys. C 17 (2) , pp. 305-314
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243. Michael Masa, Stanisław Cebrat, Dietrich Stauffer (2006) Does telomere elongation lead to a longer lifespan if cancer is considered? Physica A 364 () , pp. 324-330
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244. Przemysław Biecek, Stanisław Cebrat (2006) Immunity in the Noisy Penna Model International Journal of Modern Physics C 12 (17) , pp. 1823-1829
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245. Stanisław Cebrat, Przemysław Biecek (2006) Relations between organisms and the environment in the Management of Risk Factors in economically relevant human activities
     
     
246. Przemysław Biecek, Stanisław Cebrat (2006) Fluctuations, Environment, Mutations Accumulation and Ageing International Journal of Modern Physics C 17 (7) , pp. 923-931
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247. Waldemar Wagner, Aurelia Walczak-Drzewiecka, Aleksandra Slusarczyk, Przemysław Biecek, Leszek Rychlewski, Jaroslaw Dastych (2006) Fluorescent Cell Chip a new in vitro approach for immunotoxicity screening Toxicology Letters 162 (1) , pp. 55-70
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248. Agnieszka Łaszkiewicz, Stanisław Cebrat (2005) Monte Carlo Simulations of the Age Structure of the Human Population. J of Insurance Medicine 37 (1) , pp. 3-12
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249. Agnieszka Łaszkiewicz, Stanisław Cebrat, Dietrich Stauffer (2005) Scaling effects in the Penna ageing model. Adv. Complex Systems 8 (1) , pp. 7-14
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250. Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005) Mutational and selective mechanisms shaping large-scale organization and evolution of chromosomes. Current Topics in Genetics 1 () , pp. 87-101
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251. Paweł Mackiewicz, Jolanata Zakrzewska-Czerwińska, Stanisław Cebrat (2005) Genomika – dziedzina wiedzy XXI wieku. (Genomics – science of the XXIst century). Biotechnologia 3 (70) , pp. 7-21
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252. Maciej Sobczyński, Paweł Mackiewicz, Dorota Mackiewicz, Kamila Smolarczyk, Stanisław Cebrat (2005) Nowe spojrzenie na filogenezę z punktu widzenia Genomiki (New insights into phylogeny from genomic point of view). Biotechnologia 3 (70) , pp. 102-117
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253. Jolanata Zakrzewska-Czerwińska, Paweł Mackiewicz, Anna Zawilak, Stanisław Cebrat (2005) Wyznaczenie miejsca inicjacji replikacji na podstawie sekwencji chromosomu bakteryjnego (Determination of replication initiation site). Biotechnologia 3 (70) , pp. 91-101
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254. Paweł Mackiewicz, Krystian Bączkowski, Maciej Sobczyński, Stanisław Cebrat (2005) Zagadka sierocych otwartych ramek odczytu (ORFanów) (Mystery of orphan Open Reading Frames (ORFans)). Biotechnologia 3 (70) , pp. 44-56
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255. Krystian Bączkowski, Paweł Mackiewicz, Maria Kowalczuk, Joanna Kiraga, Stanisław Cebrat (2005) Od sekwencji do funkcji – poszukiwanie genów i ich adnotacje (From sequence to function – looking for genes and their annotations). Biotechnologia 3 (70) , pp. 22-44
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256. Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Stanisław Cebrat (2005) Wpływ replikacji na organizację i ewolucję genomów bakterii (Influence of replication on organization and evolution of bacterial genomes). Biotechnologia 3 (70) , pp. 75-90
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257. Stanisław Cebrat, Dietrich Stauffer (2005) Altruism and antagonistic pleiotropy in Penna ageing model. Theory in Biosciences 123 () , pp. 235-241
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258. Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005) Higher mutation rate helps to rescue genes from the elimination by selection. Biosystems 80 () , pp. 192-199
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259. Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005) Correspondence between mutation and selection pressure and the genetic code degeneracy in the gene evolution. Future Generation Computer Systems 21 () , pp. 1033-1039
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260. Joanna Szyda, Przemysław Biecek, Florian Frommlet, Jayanta Ghosh, Małgorzata Bogdan (2005) Analysis of genetic background of quantitative traits related to alcoholism by mixed inheritance and oligogenic models Technical Report, Wroclaw University of Technology
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261. Przemysław Biecek, Artur Suchwalko, Adam Zagdanski (2005) Nowa jakość kształcenia - realizacja kompleksowej platformy dydaktycznej Nowe media w edukacji. Osiągnięcia pracowników Politechniki Wrocławskiej w zakresie nauczania z wykorzystaniem nowych mediów
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262. Maria Kowalczuk, Agnieszka Łaszkiewicz, Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004) Using Monte Carlo simulations for the gene and genome evolution Trends in Statistical Physics 4 () , pp. 29-44
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263. Aleksandra Nowicka, Artur Duda, Mirosław Roman Dudek (2004) Effect of Variable Surrounding on Species Creation. C.R. Biologies 327 () , pp. 283-292
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264. Stanisław Cebrat, Andrzej Pękalski (2004) The Role of Dominant Mutations in the Population Expansion. Lecture Notes in Computer Science 3039 () , pp. 765-770
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265. Magdalena Wołoszyńska, Tomasz Bocer, Paweł Mackiewicz, Hanna Jańska (2004) A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus. Plant Molecular Biology 56 () , pp. 811-820
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266. Paweł Mackiewicz, Jolanata Zakrzewska-Czerwińska, Anna Zawilak, Mirosław Roman Dudek, Stanisław Cebrat (2004) Where does bacterial replication start? Rules for predicting the oriC region. Nucleic Acids Res. 32 (13) , pp. 3781-3791
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267. Stanisław Cebrat, Jan P. Radomski, Dietrich Stauffer (2004) Genetic Paralog Analysis and Simulations. Lecture Notes in Computer Science 3039 () , pp. 709-717
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268. Natalia Polak, Joanna Kiraga, Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004) How Gene Survival Depends on Their Length. Lecture Notes in Computer Science 3039 () , pp. 694-699
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269. Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Joanna Kiraga, Natalia Polak, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004) Differential Gene Survival under Asymmetric Directional Mutational Pressure. Lecture Notes in Computer Science 3039 () , pp. 687-693
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270. Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Joanna Kiraga, Stanisław Cebrat, Mirosław Roman Dudek (2004) Representation of mutation pressure and selection pressure by PAM matrices. Applied Bioinformatics 3 (1) , pp. 31-39
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271. Małgorzata Dudkiewicz, Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004) Simulation of gene evolution under directional mutational pressure. Physica A 336 (1-2) , pp. 63-73
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272. Anna Bartkowiak, Stanisław Cebrat, Paweł Mackiewicz (2004) Probabilistic PCA and neural networks in search of representative features for some yeast genome data. In: T. Burczynski, W. Cholewa, W. Moczulski (editors), Recent developments in artificial intelligence methods. AI-METH Series on Artificial Intelligence Methods, Gliwice , pp. 21-26
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273. Agnieszka Łaszkiewicz, Szymon Szymczak, Stanisław Cebrat (2003) The Oldest Old and the Population Heterogeneity. Int. J. Modern Phys. C 14 (10) , pp. 1355-1362
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274. Agnieszka Łaszkiewicz, Szymon Szymczak, Stanisław Cebrat (2003) Prediction of the human life expectancy. Theory in Biosciences 122 () , pp. 313-320
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275. Agnieszka Łaszkiewicz, Szymon Szymczak, Stanisław Cebrat (2003) Speciation Effect in the Penna Ageing Model. Int. J. Modern Phys. C 14 (6) , pp. 765-774
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276. Stanisław Cebrat (2003) Czy genomika wyewoluowała z ekonomii. Wrocławski Biuletyn Gospodarczy 30 () , pp. 14-18
     
     
277. Stanisław Cebrat (2003) Genetic information, acquisiton, access and control, (book review). J. Biol. Sci. 35 () , pp. 154-155
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278. Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003) High divergence rate of sequences located on different DNA strands in closely related bacterial genomes. Journal of Applied Genetics 44 (4) , pp. 561-584
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279. Dorota Mackiewicz, Paweł Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003) Rearrangements between Differently Replicating DNA strands in Asymmetric Bacterial Genomes. Acta Microbiologica Polonica 52 (3) , pp. 245-261
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280. Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat, Mirosław Roman Dudek (2003) Correlation between mutation pressure, selection pressure, and occurrence of amino acids. Lecture Notes in Computer Science 2658 () , pp. 650-657
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281. Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2003) Properties of Genetic Code under Directional, Asymmetric Mutational Pressure. Lecture Notes in Computer Science 2657 () , pp. 343-350
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282. Anna Bartkowiak, Adam Szustalewicz, Stanisław Cebrat, Paweł Mackiewicz (2003) Kohonen's self-organizing maps as applied to graphical visualization of some yeast DNA data. Listy Biometryczne – Biometrical Letters 40 (2) , pp. 37-56
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283. Przemysław Biecek, Zbigniew Huzar (2003) Interfejs graficzny i diagramy sekwencji w procesie generowania prototypu Problemy i metody inżynierii oprogramowania
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284. Agnieszka Łaszkiewicz, Ewa Niewczas, Szymon Szymczak, Agnieszka Kurdziel, Stanisław Cebrat (2002) Higher mortality of the youngest organisms predicted by the Penna aging model. Int. J. Modern Phys. C 13 () , pp. 967-973
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285. Stanisław Cebrat, Dietrich Stauffer (2002) Monte Carlo simulation of genome viability with paralogs replacement. Journal of Applied Genetics 43 () , pp. 391-395
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286. Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002) Replication associated mutational pressure generating long-range correlation in DNA. Physica A 314 (1-4) , pp. 646-654
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287. Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002) How many protein-coding genes are there in the Saccharomyces cerevisiae genome? Yeast 19 (7) , pp. 619-629
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288. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001) High correlation between the turnover of nucleotides under mutational pressure and the DNA composition, BMC Evolutionary Biology 1 () , pp. 13
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289. Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat (2001) Flip-flop around the origin and terminus of replication in prokaryotic genomes. Genome Biology 2 (12) , pp. 1004.1-1004.4
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290. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001) Multiple base substitution corrections in DNA sequence evolution. Int. J. Modern Phys. C 12 (7) , pp. 1043-1053
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291. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001) DNA Asymmetry and the Replicational Mutational Pressure. Journal of Applied Genetics 42 (4) , pp. 553-577
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292. Anna Zawilak, Stanisław Cebrat, Paweł Mackiewicz, Anna Król-Hulewicz, Dagmara Jakimowicz, Walter Messer, Grażyna Gościniak, Jolanata Zakrzewska-Czerwińska (2001) Identification of a putative chromosomal replication origin from Helicobacter pylori and its interaction with the initiator protein DnaA. Nucleic Acids Res. 29 (11) , pp. 2251-2259
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293. Paweł Mackiewicz, Dorota Szczepanik, Agnieszka Gierlik, Maria Kowalczuk, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001) The differential killing of genes by inversions in prokaryotic genomes. J. Mol. Evol. 53 (6) , pp. 615-621
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294. Dorota Szczepanik, Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2001) Evolution rates of genes on leading and lagging DNA strands. J. Mol. Evol. 52 (5) , pp. 426-433
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295. Artur Duda, Aleksandra Nowicka, Paweł Dyś, Mirosław Roman Dudek (2000) Effect of inherited genetic information on stochastic predator-prey model. Int. J. Modern Phys. C 11 (8) , pp. 1527-1538
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296. Jorge S. Sa Martins, Stanisław Cebrat (2000) Random Deaths in a Computational model for age-structured populations. Theory in Biosciences 119 () , pp. 156-165
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297. Ewa Niewczas, Stanisław Cebrat, Dietrich Stauffer (2000) The influence of the Medical Care on the Human Life Expectancy in 20th Century and the Penna Ageing Model. Theory in Biosciences 119 () , pp. 122-131
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298. Ewa Niewczas, Agnieszka Kurdziel, Stanisław Cebrat (2000) Housekeeping Genes and Death Genes in the Penna Ageing Model. Int. J. Modern Phys. C 11 (4) , pp. 775-784
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299. Agnieszka Gierlik, Maria Kowalczuk, Paweł Mackiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2000) Is There a Replication-Associated Mutational Pressure in the Saccharomyces cerevisae Genome? Journal of Theoretical Biology 202 (4) , pp. 305-314
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300. Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat, Maria Kowalczuk, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Szczepanik (2000) Long-tail feature of DNA words over- and under-representation in coding sequences. Computational Methods in Science and Technology 6 () , pp. 65-71
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301. Paweł Mackiewicz (2000) Organizacja i ewolucja genomu drożdży Saccharomyces cerevisiae a problem sierocych otwartych ramek odczytu. Postępy Biochemii 46 (4) , pp. 291-298
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302. Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Dorota Szczepanik, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2000) No mystery of ORFans in genomics - generation of ORFans in the antisense of coding sequences. Proceedings of the Second International Conference on Bioinformatics of Genome Regulation and Structure, BGRS'2000, Novosybirsk, Russia, August 7-11, 2000 (2) , pp. 38-41
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303. Paulo Murilo de Oliveira, Suzana Moss de Oliveira, Dietrich Stauffer, Stanisław Cebrat (1999) Penna Ageing Model and Improvement of Medical Care in 20th Century. Physica A 273 () , pp. 145-149
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304. Stanisław Cebrat, Andrzej Pękalski (1999) Model of population evolution with and without eugenics. Eur. Phys. J. B 11 (4) , pp. 687-690
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305. Maria Kowalczuk, Agnieszka Gierlik, Paweł Mackiewicz, Stanisław Cebrat, Mirosław Roman Dudek (1999) Optimization of Gene Sequences under Constant Mutational Pressure and Selection. Physica A 273 () , pp. 116-131
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306. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Dorota Szczepanik, Mirosław Roman Dudek, Stanisław Cebrat (1999) Mechanisms generating correlation in nucleotide composition in Borrelia burgdorferi genome. Physica A 273 () , pp. 103-115
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307. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999) Asymmetry of nucleotide composition of prokaryotic chromosomes. Journal of Applied Genetics 40 (1) , pp. 1-14
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308. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999) How does replication-associated mutational pressure influence amino acid composition of proteins? Genome Research 9 (5) , pp. 409-416
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309. Stanisław Cebrat, Mirosław Roman Dudek, Agnieszka Gierlik, Maria Kowalczuk, Paweł Mackiewicz (1999) Effect of replication on the third base of codons. Physica A 265 (1-2) , pp. 78-84
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310. Anna Bartkowiak, Stanisław Cebrat, Paweł Mackiewicz (1999) Some statistical problems arising when investigating DNA sequences. Second European Conference on Highly Structured Stochastic Systems, Pavia, September 14-18, 1999, Book of Abstracts: , pp. 19-21
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311. Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Mirosław Roman Dudek, Stanisław Cebrat (1999) Origin and properties of noncoding ORFs in the yeast genome. Nucleic Acids Res. 27 (17) , pp. 3503-3509
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312. Stanisław Cebrat, Paweł Mackiewicz, Mirosław Roman Dudek (1999) Kodujące palindromy. w: Symetrie, systemy, ewolucja. (red. A. Nobis, A. Ogorzałek), Studium Generale, Wydawnictwo Uniwersytetu Wroclawskiego, Wroclaw , pp. 93-114
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313. Stanisław Cebrat, Mirosław Roman Dudek (1999) Periodyczność w zdolnościach kodujących DNA. w: Symetrie, systemy, ewolucja. (red. A. Nobis, A. Ogorzałek), Studium Generale, Wydawnictwo Uniwersytetu Wroclawskiego, Wroclaw , pp. 69-92
     
     
314. Maria Kowalczuk, Paweł Mackiewicz, Agnieszka Gierlik, Mirosław Roman Dudek, Stanisław Cebrat (1999) Total Number of Coding Open Reading Frames in the Yeast Genome. Yeast 15 () , pp. 1031-1034
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315. Agnieszka Gierlik, Paweł Mackiewicz, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999) Some hints on Open Reading Frame statistics - how ORF length depends on selection. Int. J. Modern Phys. C 10 (4) , pp. 635-643
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316. Johan Schneider, Stanisław Cebrat, Dietrich Stauffer (1998) Why do women live longer than men? A Monte Carlo simulation of Penna models with X and Y chromosomes. Int. J. Mod. Physics C 9 () , pp. 721-725
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317. Stanisław Cebrat (1998) Penna Model From the Perspective of One Geneticist. Physica A 258 () , pp. 493-498
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318. Stanisław Cebrat, Mirosław Roman Dudek (1998) The effect of DNA phase structure on DNA walks. The European Physical Journal B 3 () , pp. 271-276
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319. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (1998) Sequence asymmetry as a parameter indicating coding sequence in Saccharomyces cerevisiae genome. Theory in Biosciences 117 () , pp. 78-89
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320. Stanisław Cebrat, Paweł Mackiewicz, Mirosław Roman Dudek (1998) The role of the genetic code in generating new coding sequences inside existing genes. Biosystems 45 (2) , pp. 165-176
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321. Stanisław Cebrat, Jerzy Kąkol (1997) The effect of social alliances on wolve population on their survival under hunting. Int. J. Mod. Physics C 8 (2) , pp. 417-426
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322. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (1997) Is there any mystery of ORPHANs? Journal of Applied Genetics 38 (4) , pp. 365-372
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323. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz, Maria Kowalczuk, Małgorzata Fita (1997) Asymmetry of coding versus non-coding strand in coding sequences of different genomes. Microbial & Comparative Genomics 2 (4) , pp. 259-268
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324. Stanisław Cebrat, Mirosław Roman Dudek, Adelina Rogowska (1997) Asymmetry in nucleotide composition of sense and antisense strands as a parameter for discriminating open reading frames as protein coding sequences. Journal of Applied Genetics 38 (1) , pp. 1-9
     
     
325. Stanisław Cebrat, Mirosław Roman Dudek (1996) Symmetry in chromosome fractal organization and DNA domain structure. preprint, Instytut Fizyki Teoretycznej, Uniwersytet Wrocławski 904/96 ()
     
     
326. Stanisław Cebrat, Mirosław Roman Dudek (1996) Symmetry in chromosome fractal organization and DNA domain structure. Proceedings of the 8th Joint EPS-APS Int. Conference on Physics Computing ‘96, eds. P. Borchards, M. Bubak, A. Maksymowicz (Academic Computer Center, CYFRONET-KRAKÓW) , pp. 371-374
     
     
327. Stanisław Cebrat, Mirosław Roman Dudek (1996) Generation of overlapping reading frames Trends in Genetics 12 () , pp. 12
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328. Mirosław Roman Dudek, Stanisław Cebrat (1995) Stochastic DNA in the presence of the coding bias. preprint, Instytut Fizyki Teoretycznej, Uniwersytet Wrocławski 897/95 ()
     
     
329. Stanisław Cebrat, Mirosław Roman Dudek (1995) Coding rhythm of DNA strands. preprint, Instytut Fizyki Teoretycznej, Uniwersytet Wrocławski 893/95 ()