Papers by Michał Burdukiewicz

1. Michał Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Katarzyna Hubicka, Mateusz Bąkała, Anna Lassota, Jakub Stecko, Natalia Szymańska, Jakub W Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jarosław Chilimoniuk, Izabela Jęśkowiak, Marlena Gąsior-Glogowska, Małgorzata Kotulska (2023)
   AmyloGraph: a comprehensive database of amyloid–amyloid interactions. Nucleic Acids Research
   51 (D1)
   
2. Katarzyna Sidorczuk, Adrianna Aleksandrowicz, Michał Burdukiewicz, Robert A. Kingsley , Rafał Kolenda (2023)
   Genomic characterization of enterohaemolysin-encoding haemolytic Escherichia coli of animal and human origin. Microbial Genomics
   9 (4)
   
3. Katarzyna Sidorczuk, Przemysław Gagat, Jakub Kała, Henrik Nielsen, Filip Pietluch, Paweł Mackiewicz, Michał Burdukiewicz (2023)
   Prediction of protein subplastid localization and origin with PlastoGram. Scientific Reports
   13 () pp. 8365
   
4. Przemysław Gagat, Anna Duda-Madej, Michał Ostrówka, Filip Pietluch, Alicja Seniuk, Paweł Mackiewicz, Michał Burdukiewicz (2023)
   Testing antimicrobial properties of selected short amyloids. International Journal of Molecular Sciences
   24 (1) pp. 804
   
5. Oriol Bárcenas, Carlos Pintado-Grima, Katarzyna Sidorczuk, Felix Teufel, Henrik Nielsen, Salvador Ventura, Michał Burdukiewicz (2022)
   The dynamic landscape of peptide activity prediction Computational and Structural Biotechnology Journal
   20 () pp. 6526–6533
   
6. Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch, Jakub Kała, Dominik Rafacz, Mateusz Bąkała, Jadwiga Słowik, Rafał Kolenda, Stefan Rödiger, Legana C. H. W. Fingerhut, Ira R. Cooke, Paweł Mackiewicz, Michał Burdukiewicz (2022)
   Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data Briefings in Bioinformatics
   23 (5) pp. 1-12
   
7. Natalia Szulc, Michał Burdukiewicz, Marlena Gąsior-Glogowska, Jakub W Wojciechowski, Jarosław Chilimoniuk, Paweł Mackiewicz, Tomas Šneideris, Vytautas Smirnovas, Małgorzata Kotulska (2021)
   Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data Scientific Reports
   11 () pp. 8934
   
8. Rafał Kolenda, Katarzyna Sidorczuk, Mateusz Noszka, Adrianna Aleksandrowicz, Muhammad Moman Khan, Michał Burdukiewicz, Derek Pickard, Peter Schierack (2021)
   Genome placement of alpha-haemolysin cluster is associated with alpha-haemolysin sequence variation, adhesin and iron acquisition factor profile of Escherichia coli Microbial Genomics
   7 (21) pp. 000743
   
9. Jarosław Chilimoniuk, Alicja Gosiewska, Jadwiga Słowik, Romano Weiss, P. Markus Deckert, Stefan Rödiger, Michał Burdukiewicz (2021)
   countfitteR: efficient selection of count distributions to assess DNA damage Annals of Translational Medicine
   9 (7) pp. 528
   
10. Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Jarosław Chilimoniuk, Stefan Rödiger, Przemysław Gagat (2020)
    Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram. International Journal of Molecular Sciences
    21 (12) pp. 4310
    
11. Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Mateusz Bąkała, Jadwiga Słowik, Przemysław Gagat (2020)
    CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides Pharmaceutics
    12 (11) pp. 1045
    
12. Michał Burdukiewicz, Piotr Sobczyk, Jarosław Chilimoniuk, Przemysław Gagat, Paweł Mackiewicz (2018)
    Prediction of Signal Peptides in Proteins from Malaria Parasites. International Journal of Molecular Sciences
    19 (12)
    
13. Michał Burdukiewicz, Przemysław Gagat, Sławomir Jabłoński, Jarosław Chilimoniuk, Michał Gaworski, Paweł Mackiewicz, Marcin Łukaszewicz (2018)
    PhyMet(2): a database and toolkit for phylogenetic and metabolic analyses of methanogens. Environmental Microbiology Reports
    10 (3) pp. 378-382
    
14. Dorota Mackiewicz, Piotr Posacki, Michał Burdukiewicz, Paweł Błażej (2018)
    Role of recombination and faithfulness to partner in sex chromosome degeneration Scientific Reports
    8 (1) pp. 8978
    
15. Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska (2017)
    Amyloidogenic motifs revealed by n-gram analysis. Scientific Reports
    7 (1) pp. 12961
    
16. Stefan Rödiger, Michał Burdukiewicz, Andrej-Nikolai Spiess, Konstantin Blagodatskikh (2017)
    Enabling reproducible real-time quantitative PCR research: the RDML package. Bioinformatics
    33 (24) pp. 4012-4014
    
17. Juliane Schiebel, Alexander Böhm, Jörg Nitschke, Michał Burdukiewicz, Jörg Weinreich, Aamir Ali, Dirk Roggenbuck, Stefan Rödiger, Peter Schierack (2017)
    Genotypic and Phenotypic Characteristics Associated with Biofilm Formation by Human Clinical Escherichia coli Isolates of Different Pathotypes. Applied and Environmental Microbiology
    83 (24)
    
18. Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska (2016)
    Prediction of amyloidogenicity based on the n-gram analysis ''PeerJ Preprints
    
19. Michał Burdukiewicz, Stefan Rödiger, Piotr Sobczyk, Mario Menschikowski, Peter Schierack, Paweł Mackiewicz (2016)
    Methods for comparing multiple digital PCR experiments Biomolecular detection and quantification
    9 () pp. 14-19
    
20. Andrej-Nikolai Spiess, Stefan Rödiger, Michał Burdukiewicz, Thomas Volksdorf, Joel Tellinghuisen (2016)
    System-specific periodicity in quantitative real-time polymerase chain reaction data questions threshold-based quantitation. Scientific Reports
    6 () pp. 38951
    
21. Rafał Kolenda, Michał Burdukiewicz, Peter Schierack (2015)
    A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli Frontiers in Cellular and Infection Microbiology
    5 () pp. 23
    
22. Stefan Rödiger, Michał Burdukiewicz, Konstantin Blagodatskikh, Michael Jahn, Peter Schierack (2015)
    R as an Environment for the Reproducible Analysis of DNA Amplification Experiments R Journal
    7 (1) pp. 127-150
    
23. Stefan Rödiger, Michał Burdukiewicz, Peter Schierack (2015)
    chipPCR: an R Package to Pre-Process Raw Data of Amplification Curves Bioinformatics
    31 (17) pp. 2900-2902
    
24. Andrej-Nikolai Spiess, Claudia Deutschmann, Michał Burdukiewicz, Ralf Himmelreich, Katia Klat, Peter Schierack, Stefan Rödiger (2015)
    Impact of Smoothing on Parameter Estimation in Quantitative DNA Amplification Experiments Clinical Chemistry
    61 (2) pp. 379-388