Papers by Paweł Mackiewicz

  1. Przemysław Gagat, Paweł Mackiewicz (2017)
    Cymbomonas tetramitiformis - a peculiar prasinophyte with a taste for bacteria sheds light on plastid evolution. Symbiosis
    71 () pp. 1-7
  2. Andrzej Bodył, J. Cieśla, Paweł Mackiewicz, Przemysław Gagat (2017)
    How frequent are transformations of bacterial endosymbionts into cell organelles? The case of the thecate amoeba Paulinella chromatophora. In: Grube M, Seckbach J, Muggia L (eds) Algal and Cyanobacteria Symbioses. ''World Scientific Publishing and Imperial College Press
  3. Przemysław Gagat, Dorota Mackiewicz, Paweł Mackiewicz (2017)
    Peculiarities within peculiarities – dinoflagellates and their mitochondrial genomes. Mitochondiral DNA Part B
    2 () pp. 191-195
  4. Magdalena Donczew, Paweł Mackiewicz, Agnieszka Wróbel, Klas Flärdh, Jolanata Zakrzewska-Czerwińska, Dagmara Jakimowicz (2016)
    ParA and ParB coordinate chromosome segregation with cell elongation and division during Streptomyces sporulation. Open Biology
    6 (4) pp. 150263
  5. Adam Dawid Urantówka, Paweł Mackiewicz, Tomasz Strzała (2016)
    Complete mitochondrial genome of Mitred conure (Psittacara mitratus): Its comparison with mitogenome of Socorro conure (Psittacara brevipes). Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis
    27 (5) pp. 3363-3364
  6. Adam Dawid Urantówka, Paweł Mackiewicz, Aleksandra Kroczak, Tomasz Strzała (2016)
    Complete mitochondrial genome of Red-throated conure (Psittacara rubritorquis): Its comparison with mitogenome of Socorro conure (Psittacara brevipes). Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis
    27 (5) pp. 3354-3355
  7. Przemysław Gagat, Paweł Mackiewicz (2016)
    Endosymbioza Wiedza i Życie
    6/2016 () pp. 42-47
  8. Adam Dawid Urantówka, Paweł Mackiewicz (2016)
    Complete mitochondrial genome of white-eyed parakeet (Psittacara leucophthalmus): the basal species to other Psittacara. Mitochondrial DNA Part B: Resources
    1 (1) pp. 895–897
  9. Adam Dawid Urantówka, Paweł Mackiewicz (2016)
    The first complete mitochondrial genome sequence from the blue-headed parrot (Pionus menstruus menstruus): a representative for the genus. Mitochondrial DNA Part B: Resources
    1 (1) pp. 891–892
  10. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz (2016)
    Breaking the endosymbiont-organelle border: the case of Paulinella chromatophora Endocytobiosis and Cell Research
    27 (3) pp. 45-51
  11. Adam Dawid Urantówka, Aleksandra Kroczak, Paweł Mackiewicz (2016)
    Complete mitochondrial genome of the greater Antillean parrot Amazona ventralis (Hispaniolan amazon). Mitochondrial DNA Part B: Resources
    1 (1) pp. 864–866
  12. Paweł Błażej, Małgorzata Wnętrzak, Paweł Mackiewicz (2016)
    The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization Biosystems
    150 () pp. 61-72
  13. Adam Dawid Urantówka, Aleksandra Kroczak, Tomasz Strzała, Paweł Mackiewicz (2016)
    The first complete genome of ‘true’ Aratinga genus in comparison to mitogenomes of other parrots from Arini tribe. Mitochondrial DNA Part B: Resources
    1 (1) pp. 853–855
  14. Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska (2016)
    Prediction of amyloidogenicity based on the n-gram analysis ''PeerJ Preprints
  15. Michał Burdukiewicz, Stefan Rödiger, Piotr Sobczyk, Mario Menschikowski, Peter Schierack, Paweł Mackiewicz (2016)
    Methods for comparing multiple digital PCR experiments Biomolecular detection and quantification
    9 () pp. 14-19
  16. Mateusz Baca, Danijela Popović, Krzysztof Stefaniak, Adrian Marciszak, Mikołaj Urbanowski, Adam Nadachowski, Paweł Mackiewicz (2016)
    Retreat and extinction of the Late Pleistocene cave bear (Ursus spelaeus sensu lato) The Science of Nature - Naturwissenschaften
    103 (11-12) pp. 92
  17. Urszula Ratajczak, Andrey V. Shpansky, Dmitriy G. Malikov, Krzysztof Stefaniak, Adam Nadachowski, Piotr Wojtal, Bogdan Ridush, Tatiana V. Krakhmalnaya, Vadim Stepanchuk, Paweł Mackiewicz (2016)
    Quaternary skulls of the saiga antelope from Eastern Europe and Siberia: Saiga borealis versus Saiga tatarica – One species or two? Quaternary International
    420 () pp. 329-347
  18. Paweł Mackiewicz (2015)
    Genomy jako dynamiczne struktury biologiczne ''W: Ewa Dobierzewska-Mozrzymas, Adam Jezierski (red.) Przyroda, ewolucja, kultura. Studium Generale Universitatis Wratislaviensis im. Profesora Jana Mozrzymasa, Tom XIX; Oficyna Wydawnicza ATUT, Wrocław pp. 187-207
  19. Adrian Marciszak, Krzysztof Stefaniak, Paweł Mackiewicz, Bogdan Ridush (2015)
    Ursus arctos l., 1758 from Bukovynka Cave (w Ukraine) in an overview on the fossil brown bears size variability based on cranial material. Quaternary International
    357 () pp. 136-148
  20. Paweł Błażej, Błażej Miasojedow, Małgorzata Grabińska, Paweł Mackiewicz (2015)
    Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes PLoS One
    10 (6)
  21. Paweł Mackiewicz, Przemysław Gagat (2014)
    Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus? Acta Societatis Botanicorum Poloniae
    83 (4) pp. 263–280
  22. Adam Dawid Urantówka, Paweł Mackiewicz, Tomasz Strzała (2014)
    Phylogeny of Amazona barbadensis and the Yellow-Headed Amazon Complex (Aves: Psittacidae): A New Look at South American Parrot Evolution. PLoS ONE
    9 (5)
  23. Przemysław Gagat, Paweł Mackiewicz (2014)
    Protein translocons in photosynthetic organelles of Paulinella. Acta Societatis Botanicorum Poloniae
    83 (4) pp. 399–407
  24. Mateusz Baca, Paweł Mackiewicz, Anna Stankovic, Danijela Popović, Krzysztof Stefaniak, Kinga Czarnogórska, Adam Nadachowski, Michał Gąsiorowski, Helena Hercman, Piotr Węgleński (2014)
    Ancient DNA and dating of cave bear remains from Niedźwiedzia Cave suggest early appearance of Ursus ingressus in Sudetes. Quaternary International
    339-340 () pp. 217-223
  25. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2014)
    Studies of Mutation Accumulation in Three Codon Positions using Monte Carlo Simulations and Metropolis-Hastings Algorithm ''Proceedings of the BIOSTEC 2014, 7th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2014, 5th International Conference on Bioinformatics Models, Methods and Algorithms, Angers, Loire Valley, France, 3-6 March, 2014 pp. 245-252
  26. Justyna Ciuraszkiewicz, Michał Śmiga, Paweł Mackiewicz, Anna Gmiterek, Marcin Bielecki, Mariusz Olczak, Teresa Olczak (2014)
    Fur homolog regulates Porphyromonas gingivalis virulence under low-iron/heme conditions through a complex regulatory network. Molecular Oral Microbiology
    29 (6) pp. 333-353
  27. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2014)
    Tertiary Plastid Endosymbioses in Dinoflagellates ''In: Wolfgang Löffelhardt (ed) Endosymbiosis Springer Verlag, Wien pp. 233-290
  28. Małgorzata Proćków, Tomasz Strzała, Elżbieta Kuźnik-Kowalska, Paweł Mackiewicz (2014)
    Morphological similarity and molecular divergence of Trochulus striolatus and T. montanus, and their relationship to sympatric congeners (Gastropoda: Pulmonata: Hygromiidae). Systematics and Biodiversity
    12 (3) pp. 366-384
  29. Danijela Popović, Hanna Panagiotopoulou, Mateusz Baca, Krzysztof Stefaniak, Paweł Mackiewicz, Daniel Makowiecki, Tim L. King, Jakub Gruchota, Piotr Węgleński, Anna Stankovic (2014)
    The history of sturgeon in the Baltic Sea. Journal of Biogeography
    41 (8) pp. 1590-1602
  30. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2013)
    Nucleomorph Genomes ''In: S. Maloy and K. Hughes (eds.) Brenner's Encyclopedia of Genetics, 2nd Edition. Volume 5. Elsevier Press pp. 128-133
  31. Paweł Mackiewicz, Andrzej Bodył, Krzysztof Moszczyński (2013)
    The case of horizontal gene transfer from bacteria to the peculiar dinoflagellate plastid genome. Mobile Genetic Elements
    3 (4)
  32. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2013)
    Simulation of Prokaryotic Genome Evolution Subjected to Mutational Pressures Associated with DNA Replication. Communications in Computer and Information Science
    357 () pp. 150–161
  33. Maciej Sobczyński, Paweł Mackiewicz (2013)
    Analysis of Relationship Between Amino Acid Composition of Proteins and Environmental Features of Microorganisms Using Evolutionary Algorithm and Self-Organizing Maps. ''Proceedings of the Genetic and Evolutionary Computation Conference, GECCO'13, July 6–10, 2013, Amsterdam, The Netherlands. Companion ACM 978-1-4503-1964-5/13/07 pp. 45-46
  34. Paweł Błażej, Paweł Mackiewicz, Małgorzata Wańczyk, Stanisław Cebrat (2013)
    Evolution of Bacterial Genome under Changing Mutational Pressure Computer Simulation Studies. ''Proceedings of the BIOSTEC 2013, 6th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2013, 4th International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11-14 February, 2013 pp. 272-277
  35. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat, Małgorzata Wańczyk (2013)
    Using Evolutionary Algorithms in Finding of Optimized Nucleotide Substitution Matrices. ''Proceedings of the Genetic and Evolutionary Computation Conference, GECCO'13, July 6–10, 2013, Amsterdam, The Netherlands. Companion ACM 978-1-4503-1964-5/13/07 pp. 41-42
  36. Małgorzata Proćków, Paweł Mackiewicz, Joanna Pieńkowska (2013)
    Genetic and morphological studies of species status for poorly known endemic Trochulus phorochaetius (Bourguignat, 1864) (Gastropoda: Pulmonata: Hygromiidae), and its comparison with closely related taxa. Zoological Journal of the Linnean Society
    169 () pp. 124–143
  37. Andrzej Bodył, Paweł Mackiewicz (2013)
    Endosymbiotic Theory ''In: S. Maloy and K. Hughes (eds.) Brenner's Encyclopedia of Genetics, 2nd Edition. Volume 2. Elsevier Press pp. 484-492
  38. Małgorzata Grabińska, Paweł Błażej, Paweł Mackiewicz (2013)
    Two algorithms based on Markov chains and their application to recognition of protein coding genes in prokaryotic genomes. Applicationes Mathematicae
    40 (4) pp. 447–457
  39. Przemysław Gagat, Andrzej Bodył, Paweł Mackiewicz (2013)
    How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies. Biology Direct
    8 (1) pp. 18
  40. Anna Gmiterek, Halina Wójtowicz, Paweł Mackiewicz, Małgorzata Radwan-Oczko, Małgorzata Kantorowicz, Maria Chomyszyn-Gajewska, Magdalena Frąszczak, Marcin Bielecki, Mariusz Olczak, Teresa Olczak (2013)
    The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis. PLoS ONE
    8 (7)
  41. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2012)
    Protein import into the photosynthetic organelles of Paulinella chromatophora and its implications for primary plastid endosymbiosis. Symbiosis
    58 (1-3) pp. 99-107
  42. Paweł Mackiewicz, Andrzej Bodył, Przemysław Gagat (2012)
    Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. Theory in Biosciences
    131 (1) pp. 1-18
  43. Andrzej Bodył, Paweł Mackiewicz, Przemysław Gagat (2012)
    Organelle evolution: Paulinella breaks a paradigm. Current Biology
    22 (9) pp. 304-306
  44. Krzysztof Moszczyński, Paweł Mackiewicz, Andrzej Bodył (2012)
    Evidence for horizontal gene transfer from bacteroidetes bacteria to dinoflagellate minicircles. Molecular Biology and Evolution
    29 (3) pp. 887-892
  45. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    Simulation of bacterial genome evolution under replicational mutational pressures. ''Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 pp. 51-57
  46. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    New approach in coding signal recognition using homogeneous Markov chains independently for three codon positions. International Journal of Bioscience, Biochemistry and Bioinformatics
    3 (2) pp. 183-187
  47. Daria Augustyniak, Adam Jankowski, Paweł Mackiewicz, Agnieszka Skowyra, Jan Gutowicz, Zuzanna Drulis-Kawa (2012)
    Innate immune properties of selected human neuropeptides against Moraxella catarrhalis and nontypeable Haemophilus influenzae. BMC Immunology
    13 (1) pp. 24
  48. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2012)
    How to deal with small Open Reading Frames? ''Proceedings of the BIOSTEC 2012, 5th International Joint Conference on Biomedical Engineering Systems and Technologies, Bioinformatics 2012, International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1-4 February, 2012 pp. 246-250
  49. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2012)
    Influence of mutational pressure on protein coding sequences in bacterial genomes. ''Proceedings of the Eighteenth National Conference on Applications of Mathematics in Biology and Medicine. Krynica Morska, 23-27 September 2012 pp. 136-141
  50. Ewelina A. Wójcik, Anna Brzostek, Albino Bacolla, Paweł Mackiewicz, Karen M. Vasquez, Małgorzata Korycka-Machala, Adam Jaworski, Jarosław Dziadek (2012)
    Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria. PLoS One
    7 (12)
  51. Mateusz Baca, Anna Stankovic, Krzysztof Stefaniak, Adrian Marciszak, Michael Hofreiter, Adam Nadachowski, Piotr Węgleński, Paweł Mackiewicz (2012)
    Genetic analysis of cave bear specimens from Niedźwiedzia Cave, Sudetes, Poland. Palaeontologia Electronica
    15 (2) pp. 21A
  52. Maciej Sobczyński, Paweł Mackiewicz (2011)
    Application of self-organizing maps to description of relationship between amino acid composition of proteins and ecological properties of microorganisms. Proceedings of the Seventeenth National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Kościelisko, 1-6 September 2011
    17 () pp. 96-101
  53. Zuzanna Drulis-Kawa, Paweł Mackiewicz, Agata Kęsik-Szeloch, Ewa Maciaszczyk-Dziubińska, Beata Weber-Dąbrowska, Agata Dorotkiewicz-Jach, Daria Augustyniak, Grażyna Majkowska-Skrobek, Tomasz Bocer, Joanna Empel, Andrew M. Kropinski (2011)
    Isolation and characterisation of KP34-a novel φKMV-like bacteriophage for Klebsiella pneumoniae. Appl. Microbiol. Biotechnol.
    90 (4) pp. 1333-1345
  54. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2011)
    Algorithm for finding coding signal using homogeneous Markov chains independently for three codon positions ''Proceedings of the 2011 International Conference on Bioinformatics and Computational Biology (ICBCB 2011), Haikou, China, 22-24 February, 2011 pp. 20-24
  55. Anna Stankovic, Karolina Doan, Paweł Mackiewicz, Bogdan Ridush, Mateusz Baca, Robert Gromadka, Paweł Socha, Piotr Węgleński, Adam Nadachowski, Krzysztof Stefaniak (2011)
    First ancient DNA sequences of the Late Pleistocene red deer (Cervus elaphus) from the Crimea, Ukraine. Quaternary International
    245 (2) pp. 262-267
  56. Małgorzata Wańczyk, Paweł Błażej, Paweł Mackiewicz (2011)
    Comparison of two algorithms based on Markov chains applied in recognition of protein coding sequences in prokaryotes. Proceedings of the Seventeenth National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Koscielisko, 1-6 September 2011
    17 () pp. 118-123
  57. Anna Zawilak-Pawlik, Rafał Donczew, Szymon Szafrański, Paweł Mackiewicz, Laurent Terradot, Jolanata Zakrzewska-Czerwińska (2011)
    DiaA/HobA and DnaA: a pair of proteins co-evolved to cooperate during bacterial orisome assembly. J. Mol. Biol.
    408 (2) pp. 238-251
  58. Paweł Mackiewicz, Teresa Wiszniowska, Anthony J. Olejniczak, Krzysztof Stefaniak, Paweł Socha, Adam Nadachowski (2010)
    Analysis of dental enamel thickness in bears with special attention to Ursus spelaeus and U. wenzensis (=minimus) in comparison to selected representatives of mammals. ''In: D. Nowakowski (ed.) Morphology and systematics of fossil vertebrates, DN Publisher, Wrocław pp. 60-77
  59. Paweł Mackiewicz, Przemysław Gagat, Andrzej Bodył (2010)
    Genomika protistów - bardzo zrónicowanych, ale słabo poznanych eukariotów (Genomics of Protists - very diversified but poorly studied eukaryotes). Biotechnologia
    4 (91) pp. 91-130
  60. Paweł Mackiewicz, Andrzej Bodył (2010)
    A hypothesis for import of the nuclear-encoded PsaE protein of Paulinella chromatophora (Cercozoa, Rhizaria) into its cyanobacterial endosymbionts/plastids via the endomembrane system Journal of Phycology
    46 (5) pp. 847-859
  61. Andrzej Bodył, Paweł Mackiewicz, Rafał Milanowski (2010)
    Did trypanosomatid parasites contain a eukaryotic alga-derived plastid in their evolutionary past? Journal of Parasitology
    96 (2) pp. 465-475
  62. Teresa Wiszniowska, Paweł Mackiewicz, Krzysztof Stefaniak, Paweł Socha, Dariusz Nowakowski, Adam Nadachowski (2010)
    Dental enamel structure in fossil bears Ursus spelaeus and U. wenzensis (=minimus) in comparison to selected representatives of other Carnivora. ''In: D. Nowakowski (ed.) Morphology and systematics of fossil vertebrates, DN Publisher, Wroclaw pp. 125-142
  63. Paweł Błażej, Paweł Mackiewicz, Stanisław Cebrat (2010)
    Using the genetic code wisdom for recognizing protein coding sequences. Proceedings of the 2010 International Conference on Bioinformatics & Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, Vol.
    1 () pp. 302-305
  64. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2010)
    Comparative genomic studies suggest that the cyanobacterial endosymbionts of the amoeba Paulinella chromatophora possess an import apparatus for nuclear-encoded proteins. Plant Biology
    12 () pp. 639-649
  65. Paweł Mackiewicz, Elżbieta Wyroba (2009)
    Phylogeny and evolution of Rab7 and Rab9 proteins. BMC Evolutionary Biology
    9 (1) pp. 101
  66. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2009)
    Early steps in plastid evolution: current ideas and controversies Bioessays
    31 (11) pp. 1219-1232
  67. Andrzej Bodył, John W. Stiller, Paweł Mackiewicz (2009)
    Chromalveolate plastids: direct descent or multiple endosymbioses? Trends in Ecology and Evolution
    24 (3) pp. 119-121
  68. Paweł Mackiewicz, Przemysław Biecek, Dorota Mackiewicz, Joanna Kiraga, Krystian Bączkowski, Maciej Sobczyński, Stanisław Cebrat (2008)
    Optimisation of asymmetric mutational pressure and selection pressure around the universal genetic code. Lecture Notes in Computer Science
    5103 () pp. 100 - 109
  69. Andrzej Bodył, Paweł Mackiewicz (2008)
    Were class C iron-containing superoxide dismutases of trypanosomatid parasites initially imported into a complex plastid? A hypothesis based on analyses of their N-terminal targeting signals. Parasitology
    135 (9) pp. 1101-1110
  70. Katarzyna Baldy-Chudzik, Paweł Mackiewicz, Michał Stosik (2008)
    Phylogenetic background, virulence gene profiles, and genomic diversity in commensal Escherichia coli isolated from ten mammal species living in one zoo. Vet. Microbiol.
    131 (1-2) pp. 173-184
  71. Erika T. Quintana, Katarzyna Wierzbicka, Paweł Mackiewicz, Abdalla Osman, Ahmed H. Fahal, Mohamed E. Hamid, Jolanata Zakrzewska-Czerwińska, Luis A. Maldonado, Michael Goodfellow (2008)
    Streptomyces sudanensis sp. nov., a new pathogen isolated from patients with actinomycetoma. Antonie Van Leeuwenhoek
    93 (3) pp. 305-313
  72. Andrzej Bodył, Paweł Mackiewicz (2007)
    Analysis of the targeting sequences of an iron-containing superoxide dismutase (SOD) of the dinoflagellate Lingulodinium polyedrum suggests function in multiple cellular compartments. Arch. Microbiol.
    187 (4) pp. 281-296
  73. Andrzej Bodył, Paweł Mackiewicz, John W. Stiller (2007)
    The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles? Trends Microbiol.
    15 (7) pp. 295-296
  74. Joanna Kiraga, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Przemysław Biecek, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2007)
    The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms. BMC Genomics
    8 () pp. 163
  75. Mirosław Roman Dudek, Stanisław Cebrat, Maria Kowalczuk, Paweł Mackiewicz, Aleksandra Nowicka, Dorota Mackiewicz, Małgorzata Dudkiewicz (2007)
    Information weights of nucleotides in DNA sequences. Computational Methods in Science and Technology
    13 () pp. 5-12
  76. Magdalena Wołoszyńska, Beata Kmieć, Paweł Mackiewicz, Hanna Jańska (2006)
    Copy number of bean mitochondrial genes estimated by real-time PCR 3 does not correlate with the number of gene loci and transcript levels. Plant Molecular Biology
    61 (1-2) pp. 1-12
  77. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (2006)
    Modeling gene's length distribution in genomes ''arXiv:q-bio/0607029 [q-bio.GN], Cornell University Library pp. 1-7
  78. Paweł Mackiewicz, Jolanata Zakrzewska-Czerwińska, Stanisław Cebrat (2005)
    Genomika – dziedzina wiedzy XXI wieku. (Genomics – science of the XXIst century). Biotechnologia
    3 (70) pp. 7-21
  79. Paweł Mackiewicz, Krystian Bączkowski, Maciej Sobczyński, Stanisław Cebrat (2005)
    Zagadka sierocych otwartych ramek odczytu (ORFanów) (Mystery of orphan Open Reading Frames (ORFans)). Biotechnologia
    3 (70) pp. 44-56
  80. Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
    Higher mutation rate helps to rescue genes from the elimination by selection. Biosystems
    80 () pp. 192-199
  81. Maciej Sobczyński, Paweł Mackiewicz, Dorota Mackiewicz, Kamila Smolarczyk, Stanisław Cebrat (2005)
    Nowe spojrzenie na filogenezę z punktu widzenia Genomiki (New insights into phylogeny from genomic point of view). Biotechnologia
    3 (70) pp. 102-117
  82. Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
    Correspondence between mutation and selection pressure and the genetic code degeneracy in the gene evolution. Future Generation Computer Systems
    21 () pp. 1033-1039
  83. Jolanata Zakrzewska-Czerwińska, Paweł Mackiewicz, Anna Zawilak, Stanisław Cebrat (2005)
    Wyznaczenie miejsca inicjacji replikacji na podstawie sekwencji chromosomu bakteryjnego (Determination of replication initiation site). Biotechnologia
    3 (70) pp. 91-101
  84. Krystian Bączkowski, Paweł Mackiewicz, Maria Kowalczuk, Joanna Kiraga, Stanisław Cebrat (2005)
    Od sekwencji do funkcji – poszukiwanie genów i ich adnotacje (From sequence to function – looking for genes and their annotations). Biotechnologia
    3 (70) pp. 22-44
  85. Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Stanisław Cebrat (2005)
    Wpływ replikacji na organizację i ewolucję genomów bakterii (Influence of replication on organization and evolution of bacterial genomes). Biotechnologia
    3 (70) pp. 75-90
  86. Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
    Mutational and selective mechanisms shaping large-scale organization and evolution of chromosomes. Current Topics in Genetics
    1 () pp. 87-101
  87. Paweł Mackiewicz, Jolanata Zakrzewska-Czerwińska, Anna Zawilak, Mirosław Roman Dudek, Stanisław Cebrat (2004)
    Where does bacterial replication start? Rules for predicting the oriC region. Nucleic Acids Res.
    32 (13) pp. 3781-3791
  88. Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Joanna Kiraga, Natalia Polak, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004)
    Differential Gene Survival under Asymmetric Directional Mutational Pressure. Lecture Notes in Computer Science
    3039 () pp. 687-693
  89. Małgorzata Dudkiewicz, Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004)
    Simulation of gene evolution under directional mutational pressure. Physica A
    336 (1-2) pp. 63-73
  90. Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Joanna Kiraga, Stanisław Cebrat, Mirosław Roman Dudek (2004)
    Representation of mutation pressure and selection pressure by PAM matrices. Applied Bioinformatics
    3 (1) pp. 31-39
  91. Anna Bartkowiak, Stanisław Cebrat, Paweł Mackiewicz (2004)
    Probabilistic PCA and neural networks in search of representative features for some yeast genome data. ''In: T. Burczynski, W. Cholewa, W. Moczulski (editors), Recent developments in artificial intelligence methods. AI-METH Series on Artificial Intelligence Methods, Gliwice pp. 21-26
  92. Magdalena Wołoszyńska, Tomasz Bocer, Paweł Mackiewicz, Hanna Jańska (2004)
    A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus. Plant Molecular Biology
    56 () pp. 811-820
  93. Natalia Polak, Joanna Kiraga, Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004)
    How Gene Survival Depends on Their Length. Lecture Notes in Computer Science
    3039 () pp. 694-699
  94. Maria Kowalczuk, Agnieszka Łaszkiewicz, Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004)
    Using Monte Carlo simulations for the gene and genome evolution Trends in Statistical Physics
    4 () pp. 29-44
  95. Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003)
    High divergence rate of sequences located on different DNA strands in closely related bacterial genomes. Journal of Applied Genetics
    44 (4) pp. 561-584
  96. Dorota Mackiewicz, Paweł Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003)
    Rearrangements between Differently Replicating DNA strands in Asymmetric Bacterial Genomes. Acta Microbiologica Polonica
    52 (3) pp. 245-261
  97. Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat, Mirosław Roman Dudek (2003)
    Correlation between mutation pressure, selection pressure, and occurrence of amino acids. Lecture Notes in Computer Science
    2658 () pp. 650-657
  98. Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2003)
    Properties of Genetic Code under Directional, Asymmetric Mutational Pressure. Lecture Notes in Computer Science
    2657 () pp. 343-350
  99. Anna Bartkowiak, Adam Szustalewicz, Stanisław Cebrat, Paweł Mackiewicz (2003)
    Kohonen's self-organizing maps as applied to graphical visualization of some yeast DNA data. Listy Biometryczne – Biometrical Letters
    40 (2) pp. 37-56
  100. Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002)
    How many protein-coding genes are there in the Saccharomyces cerevisiae genome? Yeast
    19 (7) pp. 619-629
  101. Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002)
    Replication associated mutational pressure generating long-range correlation in DNA. Physica A
    314 (1-4) pp. 646-654
  102. Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat (2001)
    Flip-flop around the origin and terminus of replication in prokaryotic genomes. Genome Biology
    2 (12) pp. 1004.1-1004.4
  103. Paweł Mackiewicz, Dorota Szczepanik, Agnieszka Gierlik, Maria Kowalczuk, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
    The differential killing of genes by inversions in prokaryotic genomes. J. Mol. Evol.
    53 (6) pp. 615-621
  104. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
    Multiple base substitution corrections in DNA sequence evolution. Int. J. Modern Phys. C
    12 (7) pp. 1043-1053
  105. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
    DNA Asymmetry and the Replicational Mutational Pressure. Journal of Applied Genetics
    42 (4) pp. 553-577
  106. Dorota Szczepanik, Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2001)
    Evolution rates of genes on leading and lagging DNA strands. J. Mol. Evol.
    52 (5) pp. 426-433
  107. Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
    High correlation between the turnover of nucleotides under mutational pressure and the DNA composition, BMC Evolutionary Biology
    1 () pp. 13
  108. Anna Zawilak, Stanisław Cebrat, Paweł Mackiewicz, Anna Król-Hulewicz, Dagmara Jakimowicz, Walter Messer, Grażyna Gościniak, Jolanata Zakrzewska-Czerwińska (2001)
    Identification of a putative chromosomal replication origin from Helicobacter pylori and its interaction with the initiator protein DnaA. Nucleic Acids Res.
    29 (11) pp. 2251-2259
  109. Paweł Mackiewicz (2000)
    Organizacja i ewolucja genomu drożdży Saccharomyces cerevisiae a problem sierocych otwartych ramek odczytu. Postępy Biochemii
    46 (4) pp. 291-298
  110. Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Dorota Szczepanik, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2000)
    No mystery of ORFans in genomics - generation of ORFans in the antisense of coding sequences. Proceedings of the Second International Conference on Bioinformatics of Genome Regulation and Structure, BGRS'2000, Novosybirsk, Russia, August 7-11, 2000
    (2) pp. 38-41
  111. Agnieszka Gierlik, Maria Kowalczuk, Paweł Mackiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2000)
    Is There a Replication-Associated Mutational Pressure in the Saccharomyces cerevisae Genome? Journal of Theoretical Biology
    202 (4) pp. 305-314
  112. Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat, Maria Kowalczuk, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Szczepanik (2000)
    Long-tail feature of DNA words over- and under-representation in coding sequences. Computational Methods in Science and Technology
    6 () pp. 65-71
  113. Paweł Mackiewicz, Maria Kowalczuk, Agnieszka Gierlik, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    Origin and properties of noncoding ORFs in the yeast genome. Nucleic Acids Res.
    27 (17) pp. 3503-3509
  114. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Dorota Szczepanik, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    Mechanisms generating correlation in nucleotide composition in Borrelia burgdorferi genome. Physica A
    273 () pp. 103-115
  115. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    Asymmetry of nucleotide composition of prokaryotic chromosomes. Journal of Applied Genetics
    40 (1) pp. 1-14
  116. Paweł Mackiewicz, Agnieszka Gierlik, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    How does replication-associated mutational pressure influence amino acid composition of proteins? Genome Research
    9 (5) pp. 409-416
  117. Stanisław Cebrat, Paweł Mackiewicz, Mirosław Roman Dudek (1999)
    Kodujące palindromy. ''w: Symetrie, systemy, ewolucja. (red. A. Nobis, A. Ogorzałek), Studium Generale, Wydawnictwo Uniwersytetu Wroclawskiego, Wroclaw pp. 93-114
  118. Maria Kowalczuk, Paweł Mackiewicz, Agnieszka Gierlik, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    Total Number of Coding Open Reading Frames in the Yeast Genome. Yeast
    15 () pp. 1031-1034
  119. Agnieszka Gierlik, Paweł Mackiewicz, Maria Kowalczuk, Mirosław Roman Dudek, Stanisław Cebrat (1999)
    Some hints on Open Reading Frame statistics - how ORF length depends on selection. Int. J. Modern Phys. C
    10 (4) pp. 635-643
  120. Maria Kowalczuk, Agnieszka Gierlik, Paweł Mackiewicz, Stanisław Cebrat, Mirosław Roman Dudek (1999)
    Optimization of Gene Sequences under Constant Mutational Pressure and Selection. Physica A
    273 () pp. 116-131
  121. Anna Bartkowiak, Stanisław Cebrat, Paweł Mackiewicz (1999)
    Some statistical problems arising when investigating DNA sequences. ''Second European Conference on Highly Structured Stochastic Systems, Pavia, September 14-18, 1999, Book of Abstracts: pp. 19-21
  122. Stanisław Cebrat, Mirosław Roman Dudek, Agnieszka Gierlik, Maria Kowalczuk, Paweł Mackiewicz (1999)
    Effect of replication on the third base of codons. Physica A
    265 (1-2) pp. 78-84
  123. Stanisław Cebrat, Paweł Mackiewicz, Mirosław Roman Dudek (1998)
    The role of the genetic code in generating new coding sequences inside existing genes. Biosystems
    45 (2) pp. 165-176
  124. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (1998)
    Sequence asymmetry as a parameter indicating coding sequence in Saccharomyces cerevisiae genome. Theory in Biosciences
    117 () pp. 78-89
  125. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz, Maria Kowalczuk, Małgorzata Fita (1997)
    Asymmetry of coding versus non-coding strand in coding sequences of different genomes. Microbial & Comparative Genomics
    2 (4) pp. 259-268
  126. Stanisław Cebrat, Mirosław Roman Dudek, Paweł Mackiewicz (1997)
    Is there any mystery of ORPHANs? Journal of Applied Genetics
    38 (4) pp. 365-372

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