Papers by Dorota Mackiewicz

Konrad Pawlak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz (2023)
The influence of the selection at the amino acid level on synonymous codon usage from the viewpoint of alternative genetic codes. International Journal of Molecular Sciences
24 (2) pp. 1185
Paweł Błażej, Dariusz R. Kowalski, Dorota Mackiewicz, Małgorzata Wnętrzak, Daniyah A. Aloqalaa, Paweł Mackiewicz (2022)
The structure of the genetic code as an optimal graph clustering problem Journal of Mathematical Biology
85 (1) pp. 9
Paweł Błażej, Konrad Pawlak, Dorota Mackiewicz, Paweł Mackiewicz (2022)
Model of Genetic Code Structure Evolution under Various Types of Codon Reading International Journal of Molecular Sciences
23 () pp. 1690
Konrad Pawlak, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz, Paweł Błażej (2021)
Models of genetic code structure evolution with variable number of coded labels Biosystems
210 () pp. 104528
Kuba Nowak, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2021)
The Extension of the Standard Genetic Code via Optimal Codon Blocks Division ''Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2021) - Volume 3: BIOINFORMATICS pp. 30-37
Kuba Nowak, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2021)
Some theoretical aspects of reprogramming the standard genetic code Genetics
218 (1)
Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020)
Basic principles of the genetic code extension Royal Society Open Science
7 () pp. 191384
Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2020)
The Properties of the Standard Genetic Code and Its Selected Alternatives in Terms of the Optimal Graph Partition Communications in Computer and Information Science
1211 () pp. 170-191
Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019)
The influence of different types of translational inaccuracies on the genetic code structure BMC Bioinformatics
20 (1) pp. 114
Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Przemysław Gagat, Paweł Mackiewicz (2019)
Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code. Journal of Theoretical Biology
464 () pp. 21-32
Paweł Mackiewicz, Adam Dawid Urantówka, Aleksandra Kroczak, Dorota Mackiewicz (2019)
Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications. Genome Biology and Evolution
11 (10) pp. 2824-2849
Daniyah A. Aloqalaa, Dariusz R. Kowalski, Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2019)
The impact of the transversion/transition ratio on the optimal genetic code graph partition ''Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019) - Volume 3: BIOINFORMATICS pp. 55-65
Dorota Mackiewicz, Piotr Posacki, Michał Burdukiewicz, Paweł Błażej (2018)
Role of recombination and faithfulness to partner in sex chromosome degeneration Scientific Reports
8 (1) pp. 8978
Małgorzata Wnętrzak, Paweł Błażej, Dorota Mackiewicz, Paweł Mackiewicz (2018)
The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm. BMC Evolutionary Biology
18 () pp. 192
Paweł Błażej, Małgorzata Wnętrzak, Dorota Mackiewicz, Paweł Mackiewicz (2018)
Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm. PLoS One
13 (8)
Przemysław Gagat, Dorota Mackiewicz, Paweł Mackiewicz (2017)
Peculiarities within peculiarities - dinoflagellates and their mitochondrial genomes Mitochondrial DNA Part B: Resources
2 (1) pp. 191-195
Paweł Błażej, Dorota Mackiewicz, Małgorzata Wnętrzak, Paweł Mackiewicz (2017)
The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons. G3 (Bethesda)
7 (3) pp. 967-981
Paweł Błażej, Dorota Mackiewicz, Małgorzata Grabińska, Małgorzata Wnętrzak, Paweł Mackiewicz (2017)
Optimization of amino acid replacement costs by mutational pressure in bacterial genomes. Scientific Reports
7 (1) pp. 1061
Paweł Mackiewicz, Magdalena Moska, Heliodor Wierzbicki, Przemysław Gagat, Dorota Mackiewicz (2017)
Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group PLoS One
12 (6)
Dorota Mackiewicz, Paulo Murilo de Oliveira, Suzana Moss de Oliveira, Stanisław Cebrat (2013)
Distribution of Recombination Hotspots in the Human Genome – A Comparison of Computer Simulations with Real Data PLoS ONE
8 (6)
Dorota Mackiewicz, Marta Zawierta, Wojciech Waga, Stanisław Cebrat (2010)
Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length Journal of Theoretical Biology
267 (2) pp. 186-192
Dorota Mackiewicz, Wojciech Waga, Stanisław Cebrat (2010)
Ewolucja chromosomów eukariotycznych - od baz danych do modeli komputerowych i z powrotem (Evolution of eukaryotic chromosomes - from databases to computer modeling). Biotechnologia
4 (91) pp. 131-145
Dorota Mackiewicz, Stanisław Cebrat (2009)
TO UNDERSTAND NATURE - COMPUTER MODELLING BETWEEN GENETICS AND EVOLUTION In: From Genetics to Mathematics (Series on Advances in Mathematics for Applied Sciences), ed. J. Miekisz, M. Lachowicz, World Scientific.
(79) pp. 1-33
Stanisław Cebrat, Dorota Mackiewicz, Wojciech Waga (2009)
Komputerowe modelowanie ewolucji genomów KOSMOS
1-2 (58) pp. 29-41
Paweł Mackiewicz, Przemysław Biecek, Dorota Mackiewicz, Joanna Kiraga, Krystian Bączkowski, Maciej Sobczyński, Stanisław Cebrat (2008)
Optimisation of asymmetric mutational pressure and selection pressure around the universal genetic code. Lecture Notes in Computer Science
5103 () pp. 100 - 109
Marta Zawierta, Wojciech Waga, Dorota Mackiewicz, Przemysław Biecek, Stanisław Cebrat (2008)
Phase Transition in Sexual Reproduction and Biological Evolution Int. J. Mod. Phys. C
6 (19) pp. 917-936
Wojciech Waga, Dorota Mackiewicz, Marta Zawierta, Stanisław Cebrat (2007)
Sympatric speciation as intrinsic property of expanding populations. Theory in Biosciences
126 () pp. 53-59
Joanna Kiraga, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Przemysław Biecek, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2007)
The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms. BMC Genomics
8 () pp. 163
Mirosław Roman Dudek, Stanisław Cebrat, Maria Kowalczuk, Paweł Mackiewicz, Aleksandra Nowicka, Dorota Mackiewicz, Małgorzata Dudkiewicz (2007)
Information weights of nucleotides in DNA sequences. Computational Methods in Science and Technology
13 () pp. 5-12
Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
Mutational and selective mechanisms shaping large-scale organization and evolution of chromosomes. Current Topics in Genetics
1 () pp. 87-101
Maria Kowalczuk, Dorota Mackiewicz, Paweł Mackiewicz, Natalia Polak, Stanisław Cebrat (2005)
Wpływ replikacji na organizację i ewolucję genomów bakterii (Influence of replication on organization and evolution of bacterial genomes). Biotechnologia
3 (70) pp. 75-90
Maciej Sobczyński, Paweł Mackiewicz, Dorota Mackiewicz, Kamila Smolarczyk, Stanisław Cebrat (2005)
Nowe spojrzenie na filogenezę z punktu widzenia Genomiki (New insights into phylogeny from genomic point of view). Biotechnologia
3 (70) pp. 102-117
Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
Higher mutation rate helps to rescue genes from the elimination by selection. Biosystems
80 () pp. 192-199
Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2005)
Correspondence between mutation and selection pressure and the genetic code degeneracy in the gene evolution. Future Generation Computer Systems
21 () pp. 1033-1039
Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Joanna Kiraga, Natalia Polak, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004)
Differential Gene Survival under Asymmetric Directional Mutational Pressure. Lecture Notes in Computer Science
3039 () pp. 687-693
Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Joanna Kiraga, Stanisław Cebrat, Mirosław Roman Dudek (2004)
Representation of mutation pressure and selection pressure by PAM matrices. Applied Bioinformatics
3 (1) pp. 31-39
Małgorzata Dudkiewicz, Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004)
Simulation of gene evolution under directional mutational pressure. Physica A
336 (1-2) pp. 63-73
Maria Kowalczuk, Agnieszka Łaszkiewicz, Małgorzata Dudkiewicz, Paweł Mackiewicz, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Joanna Kiraga, Mirosław Roman Dudek, Stanisław Cebrat (2004)
Using Monte Carlo simulations for the gene and genome evolution Trends in Statistical Physics
4 () pp. 29-44
Natalia Polak, Joanna Kiraga, Paweł Mackiewicz, Małgorzata Dudkiewicz, Maria Kowalczuk, Dorota Mackiewicz, Kamila Smolarczyk, Aleksandra Nowicka, Mirosław Roman Dudek, Stanisław Cebrat (2004)
How Gene Survival Depends on Their Length. Lecture Notes in Computer Science
3039 () pp. 694-699
Dorota Mackiewicz, Paweł Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003)
Rearrangements between Differently Replicating DNA strands in Asymmetric Bacterial Genomes. Acta Microbiologica Polonica
52 (3) pp. 245-261
Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2003)
High divergence rate of sequences located on different DNA strands in closely related bacterial genomes. Journal of Applied Genetics
44 (4) pp. 561-584
Aleksandra Nowicka, Paweł Mackiewicz, Małgorzata Dudkiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat, Mirosław Roman Dudek (2003)
Correlation between mutation pressure, selection pressure, and occurrence of amino acids. Lecture Notes in Computer Science
2658 () pp. 650-657
Małgorzata Dudkiewicz, Paweł Mackiewicz, Aleksandra Nowicka, Maria Kowalczuk, Dorota Mackiewicz, Natalia Polak, Kamila Smolarczyk, Mirosław Roman Dudek, Stanisław Cebrat (2003)
Properties of Genetic Code under Directional, Asymmetric Mutational Pressure. Lecture Notes in Computer Science
2657 () pp. 343-350
Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002)
How many protein-coding genes are there in the Saccharomyces cerevisiae genome? Yeast
19 (7) pp. 619-629
Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Agnieszka Łaszkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2002)
Replication associated mutational pressure generating long-range correlation in DNA. Physica A
314 (1-4) pp. 646-654
Paweł Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Stanisław Cebrat (2001)
Flip-flop around the origin and terminus of replication in prokaryotic genomes. Genome Biology
2 (12) pp. 1004.1-1004.4
Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
High correlation between the turnover of nucleotides under mutational pressure and the DNA composition, BMC Evolutionary Biology
1 () pp. 13
Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
Multiple base substitution corrections in DNA sequence evolution. Int. J. Modern Phys. C
12 (7) pp. 1043-1053
Maria Kowalczuk, Paweł Mackiewicz, Dorota Mackiewicz, Aleksandra Nowicka, Małgorzata Dudkiewicz, Mirosław Roman Dudek, Stanisław Cebrat (2001)
DNA Asymmetry and the Replicational Mutational Pressure. Journal of Applied Genetics
42 (4) pp. 553-577