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Conferences 2017-2018
  1. Błażej P., Gagat P., Wnętrzak M., Mackiewicz P. 2017, Properties of alternative genetic codes in comparison with the canonical genetic code and theoretical codon assignments. X Symposium of the Polish Bioinformatics Society 27-29 September 2017, Uniejów, Poland. Book of abstracts pp. 41

  2. Błażej P., Gagat P., Wnętrzak M., Mackiewicz P. 2017, Study on the properties of alternative genetic codes in comparison with the canonical genetic code and theoretical codon assignments. The 25th Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB) 21-25 July 2017, Prague, Czech Republic.
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  3. Burdukiewicz M., Rödiger S., Gąsior-Głogowska M., Mackiewicz P., Kotulska M. 2017, Challenges in the computational prediction of peptide amyloidogenicity. 3rd NGP-Net Symposium on non-globular proteins 28 August - 1 September 2017 , Košice, Slovakia. Book of Abstracts pp. 85

  4. Burdukiewicz M., Sobczyk P., Mackiewicz P., Spiess A., Rödiger S. 2017, Integrated analysis of digital PCR experiments in R. The R User Conference, useR! 2017 4-7 July 2017, Brussels, Belgium. Book of Contributed Abstracts pp. 114

  5. Burdukiewicz M., Hugget J., Whale A., Fehse B., Sobczyk P., Mackiewicz P., Spiess A., Schierack P., Rödiger S. 2017, dpcReport: web server and software suite for unified analysis of digital PCRs and digital assays. 8th qPCR, dPCR & NGS Symposium 3-5 April 2017, Freising, Germany.

  6. Burdukiewicz M. 2017, Predicting properties of biological sequences using n-gram analysis. Wrocław Biofilm Symposium. Amyloidic origins of biofilms - from formation to dispersion. 9-10 October 2017, Wrocław, p.

  7. Burdukiewicz M., Rödiger S., Gąsior-Głogowska M., Mackiewicz P., Kotulska M. 2017, Computational and experimental validation of amyloid databases. The 25th Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB) 21-25 July 2017, Prague, Czech Republic.
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  8. Burdukiewicz M., Sobczyk P., Rödiger S., Duda-Madej A., Gąsior-Głogowska M., Mackiewicz P., Kotulska M. 2017, AmyloGram: prediction of amyloid sequences in R. The R User Conference, useR! 2017 4-7 July 2017, Brussels, Belgium. Book of Contributed Abstracts pp. 275

  9. Kotulska M., Woźniak P. P., Burdukiewicz M., Kulbacka J. 2017, Modeling motifs and transmembrane properties of amyloid proteins. 3rd NGP-Net Symposium on non-globular proteins 28 August - 1 September 2017 , Košice, Slovakia. Book of Abstracts pp. 91-92

  10. Mackiewicz D., Posacki P., Burdukiewicz M., Błażej P. 2017, The problem of recombination suppression in evolution of sex chromosomes. The 25th Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB) 21-25 July 2017, Prague, Czech Republic.
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  11. Mackiewicz P. 2017, Importance of biofilms Wrocław Biofilm Symposium. Amyloidic origins of biofilms - from formation to dispersion. 9-10 October 2017, Wrocław, Poland.

  12. Mackiewicz P., Błażej P., Grabińska M., Wnętrzak M., Mackiewicz D. 2017, Optimization of mutational pressure in bacterial genomes according to costs of amino acid replacement. The 25th Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB) 21-25 July 2017, Prague, Czech Republic.
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  13. Mackiewicz P., Błażej P., Mackiewicz D., Grabińska M., Wnętrzak M. 2017, Costs of amino acid replacement can be minimized by mutational pressure in bacterial genomes. X Symposium of the Polish Bioinformatics Society 27-29 September 2017, Uniejów, Poland. Book of abstracts pp. 69

  14. Mackiewicz P., Baca M., Popović D., Stefaniak K., Marciszak A., Urbanowski M., Nadachowski A. 2017, Szacowanie czasów wymarcia niedźwiedzi jaskiniowych, Ursus ingressus i U. spelaeus. Warsztaty "Zróżnicowanie gatunkowe i genetyczne fauny plejstocenu i holocenu w Eurazji” w ramach spotkań Konsorcjum "Centrum Badań nad Fauną Plejstocenu Europy (CBFPE)”, Instytut Biologii Ssaków Polskiej Akademii Nauk 17-19 maj 2017, Białowieża, Polska.

  15. Popović D., Baca M., Gagat P., Mackiewicz P., Ridush B., Stefaniak K. 2017, Genomic data of an extinct equid Equus hydruntinus from Crimea – preliminary results The 23rd International Cave Bear Symposium 4-7 October 2017, Liptovsky Mikulas, Slovakia.

  16. Proćków M., Pieńkowska J., Kuźnik-Kowalska E., Mackiewicz P. 2017, Is the true identity of Trochulus coelomphala (Gastropoda: Hygromiidae) possible? EUROMAL, 8th European Congress of Malacological Societies 10-14 September 2017, Kraków, Polska. Book of abstracts pp. 73

  17. Proćków M., Kuźnik-Kowalska E., Mackiewicz P. 2017, Two distinct forms of the hairy snail Trochulus hispidus (Linnaeus, 1758) show great phenotypic plasticity and no barriers in reproduction. EUROMAL, 8th European Congress of Malacological Societies 10-14 September 2017, Kraków, Polska. Book of Abstracts pp. 107

  18. Rabiniak E., Strzała T., Rekovets L., Mackiewicz P. 2017, Analiza kopalnego DNA rodzajów Lepus i Ochotona (Lagomorpha, Mammalia) z plejstocenu i holocenu Europy. Warsztaty "Zróżnicowanie gatunkowe i genetyczne fauny plejstocenu i holocenu w Eurazji” w ramach spotkań Konsorcjum "Centrum Badań nad Fauną Plejstocenu Europy (CBFPE)”, Instytut Biologii Ssaków Polskiej Akademii Nauk 17-19 maj 2017, Białowieża, Polska.

  19. Ridush B., Doan K., Mackiewicz P., Stefaniak K., Węgleński P., Stankovic A. 2017, Population history of Cervus elaphus in Crimea (Artiodactyla: Cervidae). Populations in the Non-Optimal Environment, INQUA International Field Workshop 20-23 September 2017, Chernivtsi – Neporotove – Borshchiv, Ukraine. Absrtract Book pp. 13

  20. Sobczyk P., Lauber C., Mackiewicz P., Burdukiewicz M. 2017, biogram: n-gram analysis of biological sequences in R. The R User Conference, useR! 2017 4-7 July 2017, Brussels, Belgium. Book of Contributed Abstracts pp. 285

  21. Stefaniak K., Mackiewicz P., Semba A., Ratajczak U.Urszula , Wojtal P., Shpansky A. V., Malikov D. G., Krakhmalnaya T. V., Kovalchuk O. M., Boeskorov G. G., Nikolskiy P. A., Baca M., Popović D., Pawłowska K., Jakubowski G., Roblíčkova M., Nadachowski A. 2017, Spatial-temporal distribution and morphometric differentiation of musk ox Ovibos moschatus ZIMMERMAN, 1870 from Eurasia. Populations in the Non-Optimal Environment, INQUA International Field Workshop 20-23 September 2017, Chernivtsi – Neporotove – Borshchiv, Ukraine. Absrtract Book pp. 15

  22. Wnętrzak M., Błażej P., Grabińska M., Mackiewicz P. 2017, Representations of Markov processes in biological optimization problems. The 25th Conference on Intelligent Systems for Molecular Biology and the 16th European Conference on Computational Biology (ISMB/ECCB), 21-25 July 2017, Prague, The Czech Republic.
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  23. Wnętrzak M., Błażej P., Mackiewicz P. 2017, The Application of Multi-objective Approach in the Optimization of the Genetic Code. X Symposium of the Polish Bioinformatics Society 27-29 September 2017, Uniejów, Poland. Book of abstracts pp. 42

  24. Wnętrzak M., Błażej P., Grabińska M., Mackiewicz P. 2017, Representations of Markov processes in biological optimization problems. Gdańsk Summer School of Advanced Science on Algorithms for Discrete Optimization 5-12 September 2017, Gdańsk, Poland.

  25. Bielecki M., Antonyuk S., Strange R. W., Smalley J. W., Śmiga M., Stępień P., Mackiewicz P., Noceń P., Olczak M., Olczak T. 2018, Porphyromonas gingivalis HmuY and Tannerella forsythia Tfo - two homologous proteins with different heme-binding properties The 43rd FEBS Congress , Prague, Czech Republic. Febs Open Bio 8 pp. 428

  26. Bielecki M., Antonyuk S., Strange R. W., Smalley J. W., Śmiga M., Stępień P., Mackiewicz P., Noceń P., Olczak M., Olczak T. 2018, Prevotella intermedia produces two homologous proteins to Porphyromonas gingivalis HmuY with different heme-binding properties The 43rd FEBS Congress 7-12 July 2018, Prague, Czech Republic. Febs Open Bio 8 pp. 429

  27. Błażej P., Kowalski D. R., Mackiewicz D., Wnętrzak M., Aloqalaa D. A., Mackiewicz P. 2018, The structure of the genetic code as an optimal graph clustering problem XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 35

  28. Błażej P., Wnętrzak M., Mackiewicz P. 2018, The Importance of Changes Observed in the Alternative Genetic Codes. The 11th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2018 19-21 January 2018, Funchal, Madeira, Portugal. Final Program and Book of Abstracts: pp. 101; Proceedings, Papers pp. 154-159
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  29. Błażej P. 2018, The structure of the genetic code as an optimal graph clustering problem Fifth International Conference in Code Biology 5-9 June 2018, Granada, Spain. Abstracts pp. 29

  30. Błażej P., Mackiewicz D., Wnętrzak M., Mackiewicz P. 2018, The influence of selection at the amino acid level on the usage of synonymous codons XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 61

  31. Burdukiewicz M., Spiess A., Rödiger S. 2018, predPCR: automated classification of sigmoid curves. XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 16

  32. Burdukiewicz M., Gagat P., Jabłoński S., Chilimoniuk J., Gaworski M., Mackiewicz P., Łukaszewicz M. 2018, PhyMet2: database and algorithm predicting culturing conditions of methanogens International Biotech Innovation Days 23-25 May 2018, Senftenberg, Germany.

  33. Burdukiewicz M., Gagat P., Jabłoński S., Chilimoniuk J., Gaworski M., Mackiewicz P., Łukaszewicz M. 2018, PhyMet2: complex database containing records on methanogens with unique feature (MethanoGram) allowing prediction of culture conditions based on 16S rRNA. Annual Conference 2018 of the Association for General and Applied Microbiology 15-18 April 2018, Wolfsburg, Germany. Abstracts pp. 131

  34. Chilimoniuk J., Burdukiewicz M., Gagat P., Jabłoński S., Gaworski M., Mackiewicz P., Łukaszewicz M. 2018, PhyMet2: a database and toolkit for phylogenetic and metabolicanalyses of methanogens. XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 18

  35. Chilimoniuk J., Mackiewicz P., Burdukiewicz M. 2018, CsgA, CsgB and CsgC - Evolutionary Interplay in Curli biogenesis 8th ASM Conference on Biofilms 7-11 October 2018, Washington DC, USA. Book of Abstracts pp. 102

  36. Cysewski D., Dąbrowska K., Burdukiewicz M., Chilimoniuk J., Dadlez M. 2018, HDX at single residue resolution reveals principles of aggregation of functional amyloids The 17th World Congress of the Human Proteome Organization (HUPO) 30 September - 3 October 2018, Orlando, Florida, USA.

  37. Gagat P., Burdukiewicz M., Sidorczuk K., Mackiewicz P. 2018, Import of nuclear-­‐encoded proteins into the photosynthetic organelles of Paulinella. The 6th Polish Evolutionary Conference 26-28 September 2018, Warsaw, Poland. Book of Abstracts pp. 18

  38. Gagat P., Burdukiewicz M., Sidorczuk K., Mackiewicz P. 2018, Protein import into the photosynthetic organelles of Paulinella species Mitochondria and Chloroplasts Gordon Research Conference 8-13 July 2018 , Lucca (Barga), Italy.

  39. Kozakiewicz D., Chilimoniuk J., Lassota A., Sikorska J., Mackiewicz P., Mackiewicz D., Burdukiewicz M. 2018, Regulation of biofilm growth. International Biotech Innovation Days 23-25 May 2018, Senftenberg, Germany.

  40. Kroczak A., Urantówka A. D., Mackiewicz P. 2018, Bioinformatic analyses of mitochondrial genomes show duplicated regions in many parrot taxa XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 29

  41. Lassota A., Chilimoniuk J., Kozakiewicz D., Sikorska J., Mackiewicz P., Mackiewicz D., Burdukiewicz M. 2018, Selective inhibition of biofilm-associated amyloids. International Biotech Innovation Days 23-25 May 2018, Senftenberg, Germany.

  42. Mackiewicz P., Urantówka A. D., Kroczak A. 2018, Efficiency of tree constructed methods and mitochondrial markers on inferring phylogenetic relationships in the example of parrots. 17th European Conference on Computational Biology, ECCB 2018 8-12 September 2018, Athens, Greece. Programme pp. 13

  43. Mackiewicz D., Posacki P., Burdukiewicz M., Błażej P. 2018, New insights in Y chromosome degeneration XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 26

  44. Mackiewicz D., Wnętrzak M., Błażej P., Mackiewicz P. 2018, Optimization of the standard genetic code in terms of to three codon positions using an evolutionary algorithm. 17th European Conference on Computational Biology, ECCB 2018 8-12 September 2018, Athens, Greece. Programme pp. 15

  45. Niedzielska N., Gąsior-Głogowska M., Burdukiewicz M., Kotulska M. 2018, To uncover what is hidden — studying amyloidogenic propensity XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 52

  46. Pietluch F., Gagat P., Mackiewicz P. 2018, In search of primary plastids' origin XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 77

  47. Popović D., Baca M., Stefaniak K., Socha P., Marciszak A., Lipecki G., Nadachowski A., Sabol M., Ridush B., Roblíčková M., Káňa V., Obada T., Stankovic A., Mackiewicz P. 2018, Analizy filogenetyczne niedźwiedzia jaskiniowego ze szczególnym uwzględnieniem prób z terenów Polski i krajów ościennych II Warsztaty "Zróżnicowanie gatunkowe i genetyczne fauny plejstocenu i holocenu w Eurazji” w ramach spotkań Konsorcjum "Centrum Badań nad Fauną Plejstocenu Europy (CBFPE)”, Centrum Nowych Technologii Uniwersytetu Warszawskiego 22-23 maja 2018, Warszawa, Polska.

  48. Popović D., Baca M., Ridush B., Stefaniak K., Gagat P., Mackiewicz P. 2018, Sekwencjonowanie genomu Equus hydruntinus ze stanowiska Emine-Bair Khosar II Warsztaty "Zróżnicowanie gatunkowe i genetyczne fauny plejstocenu i holocenu w Eurazji” w ramach spotkań Konsorcjum "Centrum Badań nad Fauną Plejstocenu Europy (CBFPE)”, Centrum Nowych Technologii Uniwersytetu Warszawskiego 22-23 maja 2018, Warszawa, Polska.

  49. Proćków M., Kuźnik-Kowalska E., Proćkow J., Błażej P., Mackiewicz P. 2018, Plastyczność fenotypowa Trochulus hispidus (Linnaeus, 1758) i jej znaczenie ewolucyjne. XXXIV Krajowe Seminarium Malakologiczne 13-15 września 2018, Toruń, Polska. Streszczenia pp. 57-58

  50. Sidorczuk K., Burdukiewicz M., Mackiewicz P., Gagat P. 2018, Two protein import pathways into the cyanobacteria-derived, photosynthetic organelles of Paulinella chromatophora XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 80

  51. Sikorska J., Chilimoniuk J., Lassota A., Kozakiewicz D., Mackiewicz P., Mackiewicz D., Burdukiewicz M. 2018, Amyloidic scaffolds in biofilms. International Biotech Innovation Days 23-25 May 2018, Senftenberg, Germany.

  52. Wnętrzak M., Błażej P., Mackiewicz P. 2018, Robustness of the standard genetic code to mutations and mistranslations regarding various amino acid properties Fifth International Conference in Code Biology 5-9 June 2018, Granada, Spain. Abstracts pp. 17

  53. Wnętrzak M., Błażej P., Mackiewicz P. 2018, Studying robustness of the standard genetic code to various types of mutations. 17th European Conference on Computational Biology, ECCB 2018 8-12 September 2018, Athens, Greece. Programme pp. 15

  54. Wnętrzak M., Błażej P., Mackiewicz P. 2018, The standard genetic code robustness to both point and frameshift mutations XI Symposium of Polish Bioinformatics Society 5-7 September 2018, Wrocław, Poland. Book of abstracts pp. 28

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